FMO01346.5prime Sequence
1189 bp (1031 high quality bases) assembled on 2008-03-18
> FMO01346.5prime
CAGTCGACATGAAGAAGATGCACGGCATCACCAAGGCAGCGGCGCCCCCA
CGGGATTACCCTTGCACCGAGTGCGAGAAGGTATTCCGCTGTCCCATGGC
GCTCAAGAAGCACATGTACAAGCACGACGGCAAGGAGTTGCCTTTCCCCT
GTAACATCTGTGGCAAAAGGTTCGTAATCAATAGTGCTCTAAAGGATCAT
CTGATGCGGCATGCGGGCATTAAGAACTACGTGTGTCCGTACTGTGGCGT
GGGAAAAACCACCAGGCAGGAATGGAACACACACATACTGACGCATACCC
AGGAGAAGAAGTTCAAGTGCCACATATGCGAGCACGCATCGCACAATAAG
CAGAGCCTGGCCAACCACATTAAGATCGTGCACGAGAAGATCAAAAACTA
TGCGTGTCAATACTGTGGAAAGACCTTTGGCAAGTCACACGCCTGCAAGA
TCCACGAGATGACGCACACGGGGGAAAAGCGCTGTGAGTGCAAGGTTTGT
GGAAAGAAGTTTCTCTATCCTAAGAGTCTGACCAAGCACTTGAAGACTCA
TGAGAAGCGTGTGCTTCGTGCTATTGAGACCTACCGCCAGCGGCAGGTGG
AAATGGGCGAGACGCCTGGTGAACAGTTCGACAATCCACCCGCGCCACCA
GTTGAGGGCATATCCATTGAGCCGATCATGTCCCGAAACGCTGCCGACGA
ATTGCTTAAGGTGTGCGCCGAATCCGTGGCCACCATTCCCAAAGATCCAC
GCCGTGTACAACGAGTGGATCTGGCGCAGTTGGCTGGCACTGCTGTGAAC
CCCATACCCTCTGTTTCAGTGCCGTCGTGGTCGCCGCAGGTGAACTTTAC
CAAGAAGGAGGGCAAACATATCTGCCCCGGGTTGTGGTCAGGGATTCAAC
AATATCGGAAACATGAAGCGGCACTATAGATCATCCACGAAAAGGTCAAA
GATTTGCCTGCCGCTTTGCCCAAAGATTCGCAAAGCTCAACGTTGAGGCA
TCACGATGATTCATACGGGCGAGAACCCTTTGAGTGCAGACTGCGCATCA
ATTTCGCCAGGAGAACGGCCCTGAGCGCCACAGCGCACCCACGAGACGTT
CACCCGTCATTCGCCAAGTTATGCGCCCGGAGACTGAACGAACCCCAGCA
AGGCAACCAGCGGATGCCAACGCGCAATTGCGGAAGCGT
FMO01346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10274-RB | 3034 | CG10274-RB | 1108..2239 | 7..1120 | 5080 | 97.7 | Plus |
| D19A-RA | 3233 | CG10269-RA | 1217..1766 | 7..556 | 950 | 78.8 | Plus |
| D19B-RA | 2685 | CG10270-RA | 1153..1662 | 52..561 | 840 | 78.8 | Plus |
| D19A-RA | 3233 | CG10269-RA | 2002..2272 | 777..1038 | 410 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:52:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6180179..6180668 | 496..7 | 2450 | 100 | Minus |
| 3L | 28110227 | 3L | 6179563..6180117 | 1038..493 | 2290 | 97.5 | Minus |
| 3L | 28110227 | 3L | 6187297..6187846 | 556..7 | 935 | 78 | Minus |
| 3L | 28110227 | 3L | 6183199..6183708 | 561..52 | 840 | 77.6 | Minus |
| 3L | 28110227 | 3L | 6190735..6191126 | 105..496 | 535 | 75.8 | Plus |
| 3L | 28110227 | 3L | 6186871..6187061 | 966..777 | 285 | 80.2 | Minus |
| 3L | 28110227 | 3L | 6182982..6183039 | 877..820 | 215 | 91.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:52:41 has no hits.
FMO01346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:03 Download gff for
FMO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RB | 1041..2177 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:16 Download gff for
FMO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RA | 1157..2293 | 1..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:39 Download gff for
FMO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10274-RB | 1103..2239 | 1..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:39 Download gff for
FMO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6179472..6180115 | 495..1120 | 95 | <- | Minus |
| 3L | 6180181..6180673 | 1..494 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:16 Download gff for
FMO01346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6172572..6173215 | 495..1120 | 95 | <- | Minus |
| arm_3L | 6173281..6173773 | 1..494 | 99 | | Minus |
