FMO01347.5prime Sequence
1187 bp (991 high quality bases) assembled on 2008-03-18
> FMO01347.5prime
CAGTCGACATGTCGCTGCCAATGAATTCGCTGTATTCGCTCACCTGGGGC
GATTACGGCACCAGCCTCGTATCGGCAATCCAATTGTTGCGCTGCCATGG
CGACCTCGTCGATTGCACGTTGGCCGCCGGCGGGCGGAGTTTTCCCGCCC
ACAAGATAGTCCTGTGCGCCGCCTCCCCCTTTCTGCTGGACTTGCTAAAG
AATACACCATGCAAGCATCCAGTGGTTATGTTGGCTGGCGTCAATGCGAA
CGATCTGGAGGCGCTGCTGGAGTTTGTGTACCGCGGAGAGGTGAGCGTGG
ATCACGCCCAGCTGCCGTCGCTACTGCAGGCTGCCCAGTGCCTGAACATC
CAGGGACTGGCACCGCAGACGGTTACCAAGGACGACTACACCACGCACTC
GATACAACTGCAGCACATGATTCCACAACATCACGACCAAGACCAACTGA
TTGCCACGATCGCCACGGCTCCACAGCAAACGGTTCATGCCCAGGTGGTG
GAGGACATCCATCATCAGGGCCAGATTCTCCAGGCAACGACCCAGACCAA
CGCAGCAGGACAACAGCAGACCATTGTGACAACCGACGCGGCTAAACATG
ACCAGGCAGTGATTCAGGCTTTTCTTCCGGCACGCAAACGCAAACCACGC
GTAAAGAAAATGTCACCTACGGCACCGAAAATAAGCAAAGTTGAAGGAAT
GGATACGATTATGGGCACACCGACCTCTTCACACGGCTCTGGATCCGTGC
AGCAGGTGCTTGGCGAAAATGGAGCCGAGGGCCAACTGCTTTCATCCACA
CCGATCATCAAGAGCGAAAGACAAAGGTAGAGACTATTGTGACCATGGAC
CCCAACAACATGATACCGGTACGTCGGCTAATGCGGCAACTGGCGAGATA
CACCAGCACAGGAGCCACTGGCTCATCTGCGGCAATACAAGCGGCGTCTA
TCCACGCCAAAGCAAAACGCGCTAAACATCCGCCCGGAACAGAAGAAGCC
ACGTTCACGATCACATCTGAACACCTGCCTACTGCCTCATTTGCTATGCT
GTCATTCGTCATTCCCGACTGGCGGCGCCACCTCGAGCTGGCGCATTTGC
AACCGGCGTGAGAAGGGAAAGAAGGTAGTCGGTACGATCACCCTAGACTC
GCCATGGAGAATAAACCCTCCTGCCCAAGAGGTGCTA
FMO01347.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:47:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trl-RK | 3145 | CG33261-RK | 357..1486 | 9..1123 | 5025 | 97.3 | Plus |
| Trl-RJ | 3814 | CG33261-RJ | 242..1371 | 9..1123 | 5025 | 97.3 | Plus |
| Trl-RI | 3806 | CG33261-RI | 357..1486 | 9..1123 | 5025 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:47:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14754085..14754552 | 666..199 | 2340 | 100 | Minus |
| 3L | 28110227 | 3L | 14753633..14753966 | 993..667 | 1290 | 97.3 | Minus |
| 3L | 28110227 | 3L | 14756904..14757095 | 200..9 | 960 | 100 | Minus |
| 3L | 28110227 | 3L | 14753366..14753469 | 1098..999 | 190 | 85.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:47:30 has no hits.
FMO01347.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:05 Download gff for
FMO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33261-RF | 660..1741 | 9..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:16 Download gff for
FMO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RK | 357..1438 | 9..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:57 Download gff for
FMO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trl-RI | 357..1438 | 9..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:57 Download gff for
FMO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14753631..14753966 | 667..996 | 97 | <- | Minus |
| 3L | 14754085..14754550 | 201..666 | 100 | <- | Minus |
| 3L | 14756904..14757095 | 9..200 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:16 Download gff for
FMO01347.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14746731..14747066 | 667..996 | 97 | <- | Minus |
| arm_3L | 14747185..14747650 | 201..666 | 100 | <- | Minus |
| arm_3L | 14750004..14750195 | 9..200 | 100 | | Minus |
