FMO01348.5prime Sequence
1186 bp (994 high quality bases) assembled on 2008-03-18
> FMO01348.5prime
CAGTCGACATGTGTTCCACCTCGGTGCTGTGTCCGCTCTGCGCGGTGCCC
AGTTTCGGCAGTATTGACGCACTGCAGCAGAGGCTGATCAAGGCGGCCAA
CGGCCCACTGGCCTGTCCCTTTGCCAACTGCAAGGAGCTCTTCCTGGGGC
TGGACAAGCTCACCATCCACCTGTTCTCGCACACAAGTCTGATGGCTCAG
GAGGGAAACGAGAGTCCAGCGAATGGCCAACCCGCCTCGTCCCGGGGCTT
CCTTGCCGCAGCTCCTCCCAAACGGAGGGCCAAGCGAACCAGGTCCAAGC
CCGTCGTCCCAACCCCACCGCCTGTGCGGACCACCCCGCCCGCCCACTGC
GACATTTGCGAGTTCAGTTTCCGGAATACCGAGCTGAGGGACATGCACGT
CCGCTTAGTCCACGAAAATGCGGAGGGAGAACCCAAGCAAAAGGAACCCC
AACAGAAGGAACCGGACCAGGAGCCCTACAAGTGCCATCTCTGCTCCAAG
ACGTTCCGAATGAAGGGCTCCCTTCGAATCCACCTGAAAGTAGTGCACAT
GATGGGCGTGCCCTGCTCCAATCCCAATCCAAATCCTAATCCCAGTCCTA
CACCCGCTTCTACCACCAGTGCAGTTACTGCCACGCCCAAGCTGAGCATT
TGCGATCGCATTCGACACACAGAGCCTGGAGCCCTTGGCAACGGAAATAA
CTCCACGTGCACCGCATCCCAGCCATACGCGCTGAGTGGGGCGCTGAGCA
TGCTCCAGCAGTCCCCCAGTTCGCCGGAGTCGGGCACGGCCACCCCGAAG
CTGTGGGAGTGCGATGTGTGCAGCAAGTCCTTCACCACCAAGTACTTTCT
GAGAAGCACAAGCGGCTCCAACACGGGCGAGATGCCGTACACATGCGAGA
TCTGCGCCAGGACCTTCACTTCAGCAGTCGTACCACAGCATTTGCTCTAC
ACAGCGAGTAAAGCCCATGTCTGCGGGGTTGTGACGCGCTTCAAGACTGT
CTACGCTGCATAACCACAGAGGATTCACAGCGGCGAAAGCCCTCAGTGCA
AGTCTGCGCAAGTGTTCGCACGGTTTTTTCTTGTCCAACGCGCATCCACG
GGAGGGATGCTTACAAGTGCGAACTGGCAAACGTCAGTCGCCAAGTCAGT
CAAGAACATTCTGAGTGTTCTCACCGAGAGGAGTCT
FMO01348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14655-RA | 2137 | CG14655-RA | 225..1370 | 5..1122 | 4940 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4779618..4780078 | 465..5 | 2290 | 99.8 | Minus |
| 3R | 32079331 | 3R | 4778534..4779120 | 1038..464 | 2285 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:38:50 has no hits.
FMO01348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:07 Download gff for
FMO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 250..1399 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:11 Download gff for
FMO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 221..1370 | 1..1122 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:50 Download gff for
FMO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14655-RA | 221..1370 | 1..1122 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:50 Download gff for
FMO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4778534..4779119 | 465..1038 | 97 | <- | Minus |
| 3R | 4779619..4780082 | 1..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:11 Download gff for
FMO01348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 605341..605804 | 1..464 | 99 | | Minus |
| arm_3R | 604256..604841 | 465..1038 | 97 | <- | Minus |
