FMO01350.5prime Sequence
1237 bp (1028 high quality bases) assembled on 2008-03-18
> FMO01350.5prime
CAGTCGACATGGACACACCGGAGATCCACGTAAATATAAGCTCGCAGACT
TGCCGCGTCTGCCTGGAGACGCACGAGACCAATCTGTATGTCCACGATGA
AATCAAATACAACGACCTTAAGTTGGAGCTCTGGCAGTTGTTGGAGGCAG
TTTCCAAATTGAAGTGGACATGGACGGACCCAAATCTGCCTATGCATCTG
TGTCAAAATTGCGCCCGCCGGCTGATCGGCGCCTATGAGTTCATCGTCGA
AGTGGAAAACGCCCATGAAACTTTACAGAATCTCTTCGAGCAACAGGAAG
TTGCTGCCAAGCCGGATGAAGTTCATGTGGATGTCGTGGAGCTTATAGAC
CAAGACGATGTGGTCAGTATGGCACAATACCTGTCCACGTCTTTTGCCGA
ACAGCACGTGGAAATGGAGGAGAAGTATGGAGACCAAGACTGTTCAGCTT
TTACTTCAGATGTGGGCGAAGAGCCACTCTATGCGAGCGAGGATCGTGAT
GATGAGCCTGAAGACTCCTTTCAGCTGAAGCCTCGGCCAGATGAAATAGA
AAACAGAGAATTGTCGCGACCTTCCCAGCTGGGCAGTCGTTTGAACCATT
CGGCGAACTTCATCTACAAGTGCGCCGTCTGTCCGCGTGTCTTTGCCAAA
AGTGAATCTCTGACTCGTCATTTTTCCCAAGCCCACAAACTGACAGCGGA
CGTGGCCGCCATGAAGCTGGCCAACGAGAGCTGCGGCACCGGTCTGCTAA
CCTGTGAGCACTGTCCGCGGACATTCAAGCGTCAGACACACTCCGGCGAC
ACATGCAGGCATTCCATCCCGACGCAATCGCATTGGAACCCGAAGAAACG
ACGGACATTCCGCCCGAAAACGCATAGCTAAGCGGCGAGACTGTCCGCAC
TGTGGCCTGAGCTTTCCCGTATCTAGCCTTACCATCCACATTCGGCGACA
TACGGGCGATATCCGTACAGTGCGATCAATGCGAGAAGCCTTTCCGCGCA
GCCAAGATCTTAGTCTCACATGCGTCAGCACACCGGCGAGCGTCCAGTGG
AGTGCAAGATCTGCTCCAGAAGTTATTTCCCAAAAAAGCTGGGCGACCAT
GCATGCACACCGGTCAAGGCGTACTCCTGCAAATGTGCACCAGAGACTTG
TGCAGTCACGACTTAGATCCATTGGGGCCTACGGGCGAGCGCACAATATA
CAGTGGTGGAAGTTGCCCGAGGAAGAACCTTTGTGTT
FMO01350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3281-RA | 1870 | CG3281-RA | 93..1313 | 8..1205 | 5285 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11961594..11962505 | 1068..163 | 4200 | 98.9 | Minus |
| 3R | 32079331 | 3R | 11962557..11962713 | 164..8 | 785 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:37:45 has no hits.
FMO01350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:21 Download gff for
FMO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 89..1255 | 8..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:16 Download gff for
FMO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 93..1259 | 8..1157 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:41 Download gff for
FMO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3281-RA | 93..1259 | 8..1157 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:41 Download gff for
FMO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11961494..11962503 | 165..1157 | 97 | <- | Minus |
| 3R | 11962557..11962713 | 8..164 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:16 Download gff for
FMO01350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7787216..7788225 | 165..1157 | 97 | <- | Minus |
| arm_3R | 7788279..7788435 | 8..164 | 100 | | Minus |
