FMO01351.5prime Sequence
1219 bp (1040 high quality bases) assembled on 2008-03-18
> FMO01351.5prime
CAGTCGACATGACGCTGGACAGCTACAACATCTTCAACGATGAGTACTTG
TTCAACATGCCGCTGTCGCCGCTGCCAAAAGTGCTCGGCAACTTTGAGAC
CGGCCAGAGTGTTCTCACACTGACGACGCCCACGTTGACGCCGACCACCA
CGCGCAACATCGAGGACACACTGGGCCACTTGCTCTCGGACACGCAGACC
GATCGTGTGGCTGGTTGCGCGGGATTCGCAGTGCCAAAGGTGCTACCCAA
CGCCATTGATGTCCTGGGCATGGGTATTCCCACCGGTGTTTCGTCGCTCC
CACTTCAGCAGACATTCGATTTGAGCCTGGGGCAGGGCAGCGAGTCCGAG
GACTCCAACGCTTCGTACAACGATACGCAGATGAACGAGGAGCAGGACAC
GACCGATACTTCAAGTGCCCATACGGACAGCACCTCGTACCAAGCTGGCC
ACATCATGGCGGGCAGCGTGAACGGCGGCGGTGTCAACAACTTCTCCAAT
GTCCTGGCCGCCGTGAGCTCTAGCCGCGGATCGGCGTCGGTGGGCAGCAG
CAACGCGAATACCTCAAATACGCCGGCTCGTCGTGGCGGCGGCAGACGCC
CCAACCGGTCGACGAACATGACCCCGGAGGAGGAGCAGAAGCGGGCCGTG
CGCCGGGAGCGGAACAAACAGGCGGCGGCCCGTTGCCGCAAGAGGCGCGT
GGACCAGACCAACGAGCTCACCGAGGAGGTGGAGCAGCTGGAGAAGCGGG
GCGAGAGCATGCGCAAGGAGATCGAGGTGCTGACGAACAGCAAGAATCAG
CTGGAGTACCTTCTGGCCACCCACCGGGCCACCTGCCAAAAGATTCGCTC
CGACATGCTGAGCGTGGTCACCTGCAACGGTCTGATTGCCCGGGCCGGAC
TCCTGAGCGCCGGGAGCAGCGGCAGCGGCGCGAGCAGCCACACACTACAC
AGCAACGACAGCAGCACGGCACGATCACGGGCATGACGCCACGCTGAACT
CCACCGGGAGGAGCATCACCCTTGGATCCTCAGGCCGGCGGCGAACATCG
AATAGCTGCTGATGCACATCAAGGACGAGCACTTGATGGGGCATCGATCA
GATCGGCTTGACAAGACGTCCACCGCCAGCAAGCCCATCACCTTGGCGCC
CAAGTCAATGCCCCGTACTGGTCCGAATTTAACCCACCGGGGCCTGCTTC
GGGATCTCTGCAGAAACGC
FMO01351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RB | 3194 | CG33956-RB | 465..1695 | 9..1214 | 5095 | 95.5 | Plus |
| kay-RF | 4574 | CG33956-RF | 1919..3075 | 83..1214 | 4725 | 95.3 | Plus |
| kay-RG | 3738 | CG33956-RG | 1084..2239 | 84..1214 | 4720 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29791787..29792461 | 412..1080 | 2845 | 96.4 | Plus |
| 3R | 32079331 | 3R | 29791392..29791720 | 83..411 | 1615 | 99.4 | Plus |
| 3R | 32079331 | 3R | 29783073..29783147 | 9..83 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:17 has no hits.
FMO01351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:22 Download gff for
FMO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33956-RB | 456..1696 | 1..1219 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:15 Download gff for
FMO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 458..1698 | 1..1219 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:37 Download gff for
FMO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RB | 458..1698 | 1..1219 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:37 Download gff for
FMO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29783066..29783147 | 1..83 | 95 | -> | Plus |
| 3R | 29791393..29791720 | 84..411 | 99 | -> | Plus |
| 3R | 29791787..29792617 | 412..1219 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:15 Download gff for
FMO01351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25608788..25608869 | 1..83 | 95 | -> | Plus |
| arm_3R | 25617115..25617442 | 84..411 | 99 | -> | Plus |
| arm_3R | 25617509..25618339 | 412..1219 | 93 | | Plus |
