FMO01352.5prime Sequence
1188 bp (1006 high quality bases) assembled on 2008-03-18
> FMO01352.5prime
CAGTCGACATGGAGGACAGCCAAATGGACACAAGCTCGCCGACAGAGTCC
AGCTCCGAGGTGAACTTCACTGCGGAGGAGGATAAATCGCAGGAAACGCG
TTCCGCAGCCGGCGTTTGTTACTGCGGCAAGGAGCGCAATCTCAATATTG
TGGAGCTGCTGTGTGCCACCTGTTCACGCTGGGTGCACGAGACCTGCGTT
TCCTACCAGCTTGGTAAGGGTAAACTTCTGCCCTTCATCACCAACTATGT
GTTCGTCTGTAAAAATTGCTCTGCCAGCGGATTGGAGAGCTTTCGCAAGA
GCCAGGCTACCATATCCCAGATGTGCCACTGTGCCATTGCCAACATGCAG
CAGGCGGCTTCCAGGGACGGACGTCGCCAGATTCAGTTTAGCAAGGACAA
GGAGATCATACCGTACATCGAACAGTACTGGGAGGCCATGACCACCATGC
CACGCAGACTCACCCAGTCCTGGTACAGCACCGTCCAGCGATCTTTGGTC
AAGGATGTGCAGACCCTGTTCACCTACGAGGAGCATGCGGAACATGGCGC
CATGTACGGACTATTCCATCAGGATCTGCGAATCATCAAGCCCAACTACG
AGAGCATGAGCAAGAGCGGCGCCCTGCGACTCACCGACGATGGATATACT
CAAGCTTCCCTCTCCAAAAACAATCGACAGAAAAGGAAATTTCCCGGCAC
GGATTCGGGTCCCACGGGCAAGAAGGGTCGGCCCAGTTCCGATATTACGG
CCAATGTAAAGTTGCCACCGCATGGCTATCCATTGGAACACCCCTTCAAC
AAGGATGGCTATCGTTATATACTCGCCGAACCGGATCCACATGCTCCATT
TCGTCAGGAGTTCGACGAGAGCTCCGATTGGGCTGGCAAACCTATCCCCG
GCTGGCTCTACCGCATCCTGTGCCACATTCTGTGCTCCTGCGCTGCATGA
TCGGGCACCACAGCTGAAATAGCGAGATCGTGCGTGACGGCGACGTGATA
CTGCATGTCGAGCACCACCTCTGTGACGGATGCTGTACTTGAGTCACATC
GAAGAATGCCGACGGACTGCCACGACTGCTGGGCGGGAGTACGCAACTGC
AGTCATGATCAACAGTTCGTACTGGAATTCGCAAGGCCCAGTACGAGACC
ATGGCCAACATACATGGATGCCTATGGTGGAGGCGTAC
FMO01352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ash2-RC | 1949 | CG6677-RC | 105..1227 | 9..1098 | 4805 | 96.8 | Plus |
| ash2-RE | 1271 | CG6677-RE | 73..549 | 655..1098 | 1575 | 92.5 | Plus |
| ash2-RB | 1413 | CG6677-RB | 215..691 | 655..1098 | 1575 | 92.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24650650..24650994 | 310..654 | 1725 | 100 | Plus |
| 3R | 32079331 | 3R | 24651859..24652177 | 653..969 | 1495 | 99.4 | Plus |
| 3R | 32079331 | 3R | 24650404..24650589 | 124..309 | 930 | 100 | Plus |
| 3R | 32079331 | 3R | 24650229..24650344 | 9..124 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:15 has no hits.
FMO01352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:24 Download gff for
FMO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6677-RC | 135..1118 | 1..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:30 Download gff for
FMO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RC | 98..1081 | 1..980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:09 Download gff for
FMO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ash2-RC | 98..1081 | 1..980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:09 Download gff for
FMO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24650222..24650344 | 1..124 | 96 | -> | Plus |
| 3R | 24650405..24650589 | 125..309 | 100 | -> | Plus |
| 3R | 24650650..24650994 | 310..654 | 100 | -> | Plus |
| 3R | 24651861..24652198 | 655..989 | 97 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:30 Download gff for
FMO01352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20475944..20476066 | 1..124 | 96 | -> | Plus |
| arm_3R | 20476127..20476311 | 125..309 | 100 | -> | Plus |
| arm_3R | 20476372..20476716 | 310..654 | 100 | -> | Plus |
| arm_3R | 20477583..20477920 | 655..989 | 97 | -> | Plus |
