FMO01354.5prime Sequence
1206 bp (977 high quality bases) assembled on 2008-03-18
> FMO01354.5prime
TATAAGACCAAGTTATCAGTCGACATGATCTGTCGCCTGTGTCTGAACGC
GCTCGACGAGCAGAGCGCGGTGCTACTGTTCGACGGCGCCGGCGGAGCCA
GTGCGCCCGCACCGGATGACGAGGACGACGGCAAGGCGATGCCAGAGAGC
TACCTGGTCCAACTGATCTCGATTCACTTGTACCTCTGCCTCTCCCGCGA
CGACGCCATCTCCACCTGCATCTGCACCGAGTGCTGCTCGCAACTGGAGA
GCTTCCACAACTTCTGGAAGCTGGTGGAGCTAAAGCAGACGACGCTGTGC
AGCCAGTTTTTGGCTATCGATTGTGATGTCAACTGGTCGGAGGATGGCAG
CGAAACGCAGTTGGATGCGCAACCGCAATTGCTACTGGAGCCGGCGGAGG
AGCCCAAAGTGGTGACTCCCACAACGGCGAATAAGTTTCTCTGCATGTTC
TGCGAGAAGTCATTTAAGATGCGCCGCTACCTGGAGGAGCACATAGCCAC
CCACACCGGCGACCGACCCATTGCGTGTCCCTACTGCGAAATGGCCTTCC
GCTGCCGTTCGAATATGTACACCCATGTGAAGAGCAAGCACACCACGCAG
TGGCTAAAGGCTCGCGAAGAGCGGGATGCGGCCAAGTCGAATCAGAATCA
CACGACGCCGGAGGAGACCGCTCCAGCAGTTTTAGTTCCTGTCCCTGCTC
CTGCTCCTGCTCTTGCTTCCGCTCCTGCATCTTCTGCTTCTCCTGAAACA
CAGTAAATCCCGCTGCTACTGCTACTCCTGCTTCGTCTGCCACACCCACC
ACCAATCTCGCAGCAGCTCCTTTACCATCGCCACCAACTGTCCAACAGCT
GCCGCTGTCGGTAATCAGAGTCAACCCAGCGAGGCCATGAACCTCACCAT
ACCAAGACACCGCATCCGGTAGTCGGGGCTCACGCAATCGATCCAGTCGC
CGAAGACGCACTCGCCCAAAAGTCCAGCACCGAGGCAGCGATGTTAGCGA
CGAGATTCGCGCAGAAGCTCAGAGACGAGCTCATACTGCCATTATATGCG
TAGCGCTGCTGTCTGCAGCGCTCGCTACGGCATCGCAGACACGAATGCTG
CACACGTCTGTTGGACTTGCCACGCACATCGGAACCTTGTCGTTCTAGTT
CGCGAACCGGGCGTCACGCGGGCCTGTGAGAACCAGACAGTGCTCAACAC
GAGCAT
FMO01354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12219-RA | 2018 | CG12219-RA | 87..1148 | 25..1063 | 4760 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:38:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6300182..6300968 | 971..190 | 3670 | 99.2 | Minus |
| X | 23542271 | X | 6301035..6301199 | 189..25 | 825 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:39:00 has no hits.
FMO01354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:26 Download gff for
FMO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 72..1103 | 25..1038 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:17 Download gff for
FMO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..1118 | 25..1038 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:54 Download gff for
FMO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12219-RA | 87..1118 | 25..1038 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:54 Download gff for
FMO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6300102..6300968 | 190..1038 | 97 | <- | Minus |
| X | 6301035..6301199 | 25..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:17 Download gff for
FMO01354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6194135..6195001 | 190..1038 | 97 | <- | Minus |
| arm_X | 6195068..6195232 | 25..189 | 100 | | Minus |
