FMO01355.5prime Sequence
1200 bp (1020 high quality bases) assembled on 2008-03-18
> FMO01355.5prime
CAGTCGACATGGAGCACATAATGAATCCGTTCATGTCACCGGCTTATCTG
CTGGGCCATGGCCCACATTCCCACCAGCATGTGCACTCCCATCTACCGTC
ACACCCGCAGCCAAATGCCGCCTCTCCGGCCAGCTCACCCGGCGGATCCA
GTGGCTCTGGATCGGGATCGGCAGCGGGATCGGGCACTGGATCAGGTTCA
TCCTTAAAGCCTCGTCGCTGGGGCTCACCGCCCATCAATCTGGCCGGTCA
GTTTATCAATCCAGCCACGGGAAAGAAACGAGTACAGTGCTCCATTTGCT
TCAAGACCTTCTGCGACAAGGGCGCCCTTAAGATTCACTTTTCGGCCGTG
CATCTTCGCGAGATGCACAAGTGCACGGTGGAGGGCTGCAATATGGTGTT
CAGTTCGAGGCGTTCGAGGAATCGCCATAGCGCCAATCCGAATCCCAAAC
TCCATTCGCCACACATCCGGCGCAAGATCTCGCCGCACGATGGCCGCACT
GCCCAGCAGTTTCCGGTTTTCTCGCCCGGAACAGCCGCAGCAGCGGCCGC
TGTCGCCGGACGACTTCCGGTTGCCTTTCCCGGACTTCTGCCACCGCCGC
CGCCGCATCATGGTCACCATCCGTACGTCATGTTCGGCGGACAGGCGGGT
CTACATGGCTTGGGCCTGCTTTCCACCGGCTGTCAGGATCCCGATTCTGG
ATCGGTGGACAATGAACAGGATGCTGATCCCGAAGATGACAACGACTTTG
TGTACGTGGACATGCAGGCCAATAGCTCTAGTCCGGCGGCCTCCAGCGAG
GATCAGGAGGAACACGAACGGGATAATGAGCAGGATGAGGAGATGCACTG
CAGCTTGAGCCTGGCCAGCAGTAGTAGCATTGCCGCCGATGAGGAGCGGG
CAGCTGACCAGCCATTGATTTCAGCCTTCACAAGCGTCGCAAGTCGGAGC
AGATCGGGAACAGAGCAGAGCAGAGCAGAACGGAGCGGGAGCGAAGGAGC
AGACAGATGTGATCGACAGGAGCACGACCGACAGGAGCATGACTGGAGCG
TGAAAGCCGCCGCCAGCGATGCCTTCTCCATGATCAGTGCTGGCAGCGTA
GGTTCAGAAAGGACCGCCTCAGTTCCGCCTGTTCAGGAAGCGCTCCTCGC
CCTATAGTCTCGCGCCAGGCCTTAGCTCATCCACCCAGAAAGAGACCATC
FMO01355.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| disco-RB | 3067 | CG9908-RB | 555..1719 | 1..1134 | 4965 | 96.7 | Plus |
| disco-RA | 3247 | CG9908-RA | 559..1723 | 1..1134 | 4965 | 96.7 | Plus |
| disco-r-RD | 4485 | CG32577-RD | 1676..1929 | 249..502 | 655 | 83.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16212322..16213286 | 963..1 | 4710 | 99.7 | Minus |
| X | 23542271 | X | 16121552..16121805 | 502..249 | 655 | 83.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:20 has no hits.
FMO01355.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:27 Download gff for
FMO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9908-RB | 515..1642 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:17 Download gff for
FMO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disco-RA | 554..1681 | 1..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:38 Download gff for
FMO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| disco-RA | 559..1686 | 1..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:38 Download gff for
FMO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16212159..16213286 | 1..1100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:17 Download gff for
FMO01355.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16106192..16107319 | 1..1100 | 97 | | Minus |
