FMO01356.5prime Sequence
1192 bp (1015 high quality bases) assembled on 2008-03-18
> FMO01356.5prime
CAGTCGACATGGACGATTCGCGCAGAACTATGGCCGGCAAGATCGATTCC
CGTAGCTCATCGATAATGACAAACGATGAGAGCGTCTCCATGTATTTATC
CTTTGACGCGGAGGACACCCTGTCCAATGCCAAGTGGCAGTCGGCCCTGG
TCACCCAGAACAGCCAGTTCCTGGAGGTGCACAACAGCAAGGTGGAGGTA
AACACCGATGATAAGGACCTAAGGCGCACTATCCTAAAGGATCTGCATCA
GTTGACCATTGGGGAACCGGACCAGAATTCTCCTCTGCGCCCATTTGACA
AAAGTATTCTTAACCGGCACAACGCCTTGTGCTCCACTCCCTCCAAGGGC
AATATTTCGACCGAAACGCAGACACCACAGATCATGGAGAGCATAGATCT
GACCCAAATTGACGACAAGGAAAACACACAACCGGAGGGGTGTGGCGGCG
ATAACTCGACCTTGTCCAGTTCAGTGGACGTGACCGCCAATACGGTTAAG
GCCAATACCCTAAAAACAGGGGATGCTACCATGGACAATGTATCCTTGCA
GGAGGCTGCCAAGACCCCAGCTCCCAGCCAAGTCTATCCCTTGAGTGCGA
ACGTAGTTTTAGAGAATATAACTGAAGTATCCAACGAAGGAGTATCCATG
CTGGTCTCGCCAGCCGGAGCCGAAAAGGAGGTCGCCCATGTCAACGAGGT
AGTGAACGAAGTCTCTGAGCTAATTGCCAAAGCTCTAAAGATCTCCGCTG
ATTCTGTGAAGCCAGCGACCTCCAAATTAAAAGTGGAGGCGGGCAAGAAG
AGGCAGTCCATGAGCTCCACTTATTCGGGTGCCGCCCTACCGCGCCCTCG
GCGCTCCTATCTGCCCACCACCACCGCAGAGACGCGAACGTACTCCTTCA
AGCAGCGCATGTCGGTGGTGGTCAGACACGCTCACAGCCCAGCTCGCAAG
CGAGTGTCGGTGCGTGTGTCACTAAGCGTCGCAGCTGCTTGCCGTCTCAG
CTACAAGAGCAGCATAGAAGTCGCTCGCTGGACAGCGTGCGTTTCGCTGA
AAGATCGCCTCAAGCGGCTAAGACTCGACAAAGCATTCGGAAAAGTTTTA
GCTGCAGATTGCAACAACTTCGGTAATCTTCTTGACGTCTATGCAATGCG
ATTCGGTGTACCGGAACCATACCTTAGGCTCTGTAAACAATC
FMO01356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8478-RE | 2162 | CG8478-RE | 149..1272 | 8..1106 | 4970 | 97.6 | Plus |
| CG8478-RB | 2266 | CG8478-RB | 253..1376 | 8..1106 | 4970 | 97.6 | Plus |
| CG8478-RC | 2165 | CG8478-RC | 149..1275 | 8..1106 | 4930 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9764039..9764626 | 40..627 | 2940 | 100 | Plus |
| 3R | 32079331 | 3R | 9764679..9765053 | 626..993 | 1545 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:01 has no hits.
FMO01356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:28 Download gff for
FMO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1355 | 8..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:18 Download gff for
FMO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1355 | 8..1088 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:44 Download gff for
FMO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8478-RB | 253..1355 | 8..1088 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:44 Download gff for
FMO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9763902..9763935 | 8..41 | 100 | -> | Plus |
| 3R | 9764041..9764626 | 42..627 | 100 | -> | Plus |
| 3R | 9764681..9765163 | 628..1088 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:18 Download gff for
FMO01356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5589624..5589657 | 8..41 | 100 | -> | Plus |
| arm_3R | 5589763..5590348 | 42..627 | 100 | -> | Plus |
| arm_3R | 5590403..5590885 | 628..1088 | 95 | | Plus |
