FMO01358.5prime Sequence
1219 bp (1004 high quality bases) assembled on 2008-03-18
> FMO01358.5prime
CAGTCGACATGATGAATAGCAAGATCGCCGAGGTAGTGGTGCTCAACTGC
CGGACGTGCACGCGTGCCTGCAAGCTGCACAAGCCGCTGCAGGAGGAGAT
CGATCTGGGTTCGGAGGGCAGCACCACGCTGGCCAGCATGCTAAACTACT
GCACGGGACTCTCGTTCGAGCCGCAAGACGGCGCCGCCATGCCGCAGCAC
ATCTGCCTCCACTGCCTGCAGCTGCTGGAACAGGCGTTCAACTTCAAGCG
CATGGTCATCGATTCGGACGAGCTGCTCCGCCTGGGCCTGGACGAGGCGC
GCTGCTCCAGCTTTCACGAGAGTCAGACTCATAGCCCCAACCAGAGCCAG
CAGCACGACCAGCAACAGCAGGCGTTCGACTCCACCGAGGAGTACGTCAT
GATCGAGATGCTCAACGAGGAGCAGGAGAACGTCGCCAATTTGGATGAAG
AACTAGCAGAGGAGGATCGTCGCATCTTCGCGATGACCGTGGATGAGGAG
GAGGAGTTTCTCACCGAGGAGGTGGATCAGGATGACGAGCTGTCGGAGGA
GGAGCACCAGCTGGCACAGTCGGGCGACCAGCAGGAGGAACACATCACTA
TGGAGAGCGTGCATGAGTTTCAGCCCGCCGAAGTGGAGTATGTGACCATT
AAGAATGAGTTCGAAACGATCGTCACGGAGGAGGATGAGTTCGAGGTGAT
GAACGACTCCGGCGCCCACGACGCCATACTGGACTGTCAGATGATTGTGA
TACCCGCCGAGGGAGCCATTGACGAGGTCATCGGCGAGGAGACCCTCGAA
TTGGAGGGGGATGGGCGCGAGGAGCATCTGCTGCCGGAGGCGGAGGATGT
CTGCGAAGATGAGGACTTCCTGGAGGAGTCGCTGGACTCAGCGCCGCCGA
CCGCTGGCGAGGCGCTGCCGTACGTGTGCACCGTGTGCAGAAGGCGTTCC
GCCAGCAGTGCCGTCTCATCAGCACATGCGCTCCCACGTGACGAGAAGCA
ATACGAGTGCGAGGAGTGTGGCAAGCGTCTGAGCACCTACGCACTACAGA
ACCATGCTGAACACACACAAATGTCAAGCCGCACATGGAAGCAATGGCGG
GCGCCTCTATTCGTACACTCAGTCTGGCATTCAAAGAGAAACTCTAGGCG
GAAAGAACTTAAACTTGCCATACTGCGGCGTCGAATTGCGGGGTTTCGAT
ATATCTTGCGCGTGCTCAG
FMO01358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dwg-RA | 2002 | CG2711-RA | 134..1217 | 8..1084 | 5195 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2727831..2728263 | 8..440 | 2165 | 100 | Plus |
| X | 23542271 | X | 2728545..2728934 | 441..830 | 1950 | 100 | Plus |
| X | 23542271 | X | 2728996..2729257 | 830..1084 | 885 | 96.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:32 has no hits.
FMO01358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:16 Download gff for
FMO01358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2711-RA | 129..1225 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:11 Download gff for
FMO01358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 131..1227 | 1..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:34 Download gff for
FMO01358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dwg-RA | 131..1227 | 1..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:34 Download gff for
FMO01358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2728997..2729257 | 831..1084 | 96 | == | Plus |
| X | 2727828..2728263 | 1..440 | 99 | -> | Plus |
| X | 2728545..2728934 | 441..830 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:11 Download gff for
FMO01358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2621861..2622296 | 1..440 | 99 | -> | Plus |
| arm_X | 2622578..2622967 | 441..830 | 100 | -> | Plus |
| arm_X | 2623030..2623290 | 831..1084 | 96 | == | Plus |
