FMO01359.5prime Sequence
1206 bp (1023 high quality bases) assembled on 2008-03-18
> FMO01359.5prime
CAGTCGACATGCCACCGTTGAAAACATACCAGATACACGAATACAATGGC
AATACCAGTCCGAATGCGAATGCCAATCAGAACGCCAATCAGAATCCCAC
CGGCGGCGGCGGCGACGGTGACTTCTTTGGCCAAAATCTGGGATCTGGAG
CCACAGCGGCCAGCCATCGCACAAACCTGCCCTCCTACTGCAACGCCCAA
TATCCGTTCAAGGTGCTTTCCAATCTCAACCAACTGCGCGAGCAGTCCCG
TTTCTGCGACGTGGAGATCATCGCCGGAATGGCAACATTGAGTGCCCACC
GGGCTGTCCTGAGTGCAGCCAGTGCCTACTTCGAGGCCATGTTTCGACCC
GAGCTCGGGTTAAATGAGGTCAAGCAAAAATCCGTTGTGCTGCACACAAT
CGACGGCGATATCCTGCACATCCTGCTTGACTTCATCTATACGGGTCGCT
GCGAAATCACCCAGTCCAATGTCCAGGAGCTCCTGGCCGCCGCCGACATG
CTGCAGCTAAACGAGGTGGTCGACGGGTGCTGCGAGTTCCTCTGCCGCGA
GCTGCACGCCTCCAATGCCCTGGGCATTTTACGCTTCGCCGAGGCCCACA
ACTGCGAGTCGTTGGCCAAGAGTGCACTGAACTTTGTCCACGCGAATTTC
CCAGCGGTAACGCTTGAAGATGAGTTCCTAGAAACGCCACAAACTCTACT
CTCGCAGCTACTGAACTCGGAGCTGCTGCGTGTAGACTCCGAGTCGCAGT
GTTCCAGGCGGCGCTTCGTTGGATTAAGCACGACGTGACGCAGCGCCGCT
GCTACGTCTTCGATGTCCTGTCCCACGTGCGCATGGCGCTTGTTCCGGTA
AAGGTGATCGACAGGCTCTGAAGGACGACTGTCGCGACATGTCCGTGAAG
ATAGCCCTGCGCTCCATTTGCCGGGACATTGCGTCCAAGCGCGACATTGG
TGCCGCTGCGGGTATGTCGCGTCAGCTGCCAGAAGAACATATATATCATT
GGTGGATCTCATCGGGATACGCCGCGACCTGGACTCGCCGACTGCATCTC
GAGAACGTGGCAATCGAATAATTTCCGGCCGAGTGACGACGGGCCTATGG
AGGGTGGGACGCATCTGCAGGGATCGCATGAATGCAGATCTATGGTAGAG
GAGCCGTTCAAATCGCAATGCCAGCTTAGTATCAGAACAAGTTTGGCACC
ACATGT
FMO01359.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:56:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9426-RA | 3184 | CG9426-RA | 428..1556 | 5..1115 | 5060 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:56:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13219037..13219496 | 464..5 | 2285 | 99.8 | Minus |
| 2L | 23513712 | 2L | 13218143..13218521 | 1027..656 | 1570 | 97.4 | Minus |
| 2L | 23513712 | 2L | 13218783..13218979 | 658..462 | 985 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:56:48 has no hits.
FMO01359.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:18 Download gff for
FMO01359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 431..1492 | 1..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:38 Download gff for
FMO01359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 421..1482 | 1..1049 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:49 Download gff for
FMO01359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9426-RA | 421..1482 | 1..1049 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:49 Download gff for
FMO01359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13218118..13218520 | 657..1049 | 97 | <- | Minus |
| 2L | 13218785..13218976 | 465..656 | 100 | <- | Minus |
| 2L | 13219037..13219497 | 1..464 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:38 Download gff for
FMO01359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13218118..13218520 | 657..1049 | 97 | <- | Minus |
| arm_2L | 13218785..13218976 | 465..656 | 100 | <- | Minus |
| arm_2L | 13219037..13219497 | 1..464 | 99 | | Minus |
