FMO01361.5prime Sequence
1206 bp (878 high quality bases) assembled on 2008-03-18
> FMO01361.5prime
CAGTCGACATGATGAATCAGGATAATCCATATGCGATGAATCAGACGTGC
AAGGTGTGTGGAGAGCCGGCGGCTGGATTCCATTTCGGAGCCTTTACATG
CGAGGGCTGCAAGTCCTTCTTCGGCCGATCGTACAACAATCTGTCGTCGA
TATCCGACTGCAAGAACAACGGCGAGTGCATCATCAACAAGAAGAACCGA
ACCGCCTGCAAGGCGTGCCGTCTGAAGAAGTGCCTCATGGTGGGCATGTC
GAAGAGTGGATCCCGATATGGTCGTCGCTCCAACTGGTTCAAGATCCACT
GTCTGCTGCAGGAGCAGCAACAGCAGGCGGTGGCTGCGATGGCGGCGCAC
CACAATAGCCAGCAGGCGGGTGGTGGAAGTTCCGGTGGATCGGGCGGTGG
TCAAGGAATGCCCAACGGGGTCAAGGGCATGTCGGGTGTACCCCCACCGG
CGGCTGCAGCAGCTGCTCTGGGAATGCTCGGGCATCCTGGTGGTTATCCG
GGTCTGTATGCCGTTGCCAATGCTGGCGGCTCGTCACGGAGAAAAGAGGA
GCTAATGATGTTGGGATTGGATGGCAGCGTGGAGTACGGCTCCCATAAAC
ATCCGGTGGTGGCATCACCCTCCGTAAGTTCCCCGGATTCCCACAACTCC
GACAGCTCTGTGGAGGTGAGTTCGGTGCGAGGCGACCCACTCCTACACTT
GGGCGGAAAATCCATTTCGGGAGGATCTTCAAGTGGTGCCGATGGCAGTC
ATTCGGGAGGAGGAGAGGAGGAGGAGGAGGAGTGACGCCCGGCAGACCGC
CACAGATGCGCAAGGATTTGTCGCCATTCCTGCCGCTGCCCTTCCAAGGC
CTAGCATCAATGCCCGTGAATGCCACCACCTGCGTTCCTGCCTCCCTCGC
ACCTACTCTTCCCCGGCTACACCCGACTGTACTCGCACACCAGGGCTTGC
TGAAGCAACGCAGAGCTACAACAAGCAGCGTGGCTGCAGCGTCGTGCACA
TCTATTCACTCAAGTGGTGCATGCTACGTTTCGCGACCGTGCACTTCACA
GTTAGCCAAACACACGCAGCACCACAGTAAGGATCGCCAGCACTTGTCCA
AGTTCAGTACCTATGGCGAACACATCCACGTCTACCATTGGTTTGCGTGC
AATGATCTACATGTCTCTCTTAGTTGAACGCATGTGTCTACTAAATTCAC
AGACTA
FMO01361.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| knrl-RB | 2925 | CG4761-RB | 965..2042 | 9..1076 | 4735 | 96.8 | Plus |
| knrl-RA | 3909 | CG4761-RA | 965..2042 | 9..1076 | 4735 | 96.8 | Plus |
| kni-RB | 1911 | CG4717-RB | 115..403 | 35..323 | 740 | 83.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20599008..20599982 | 1076..112 | 3895 | 96.1 | Minus |
| 3L | 28110227 | 3L | 20693838..20694049 | 323..112 | 520 | 83 | Minus |
| 3L | 28110227 | 3L | 21816276..21816483 | 112..319 | 470 | 81.7 | Plus |
| 3L | 28110227 | 3L | 20602193..20602271 | 113..35 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 20694263..20694341 | 113..35 | 230 | 86.1 | Minus |
| 3L | 28110227 | 3L | 21814778..21814856 | 35..113 | 200 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:28:08 has no hits.
FMO01361.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:55 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:23 Download gff for
FMO01361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 961..1962 | 1..998 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:30 Download gff for
FMO01361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| knrl-RA | 961..1962 | 1..998 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:30 Download gff for
FMO01361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20599000..20599980 | 114..1082 | 96 | <- | Minus |
| 3L | 20602193..20602282 | 25..113 | 94 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:23 Download gff for
FMO01361.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20592100..20593080 | 114..1082 | 96 | <- | Minus |
| arm_3L | 20595293..20595382 | 25..113 | 94 | <- | Minus |
