FMO01363.5prime Sequence
1202 bp (1019 high quality bases) assembled on 2008-03-18
> FMO01363.5prime
CAGTCGACATGGAGCTCAAGTACTCCGTCCAATCGCTTTGTCTCACCTGC
CTTGTCCACCTGGAGCATGGTGCTGGACACGATCTCTTCGTGGTTCCAGA
TCTGTTCCAGAAGCTCAGGGCATGCACTTCGTTTGATGCGGATCAAAACG
ACGGTTTCCCGAGAAACCTGTGCACCCAATGTTTCACCAAGCTGAACGAC
CTGCATGACTTCCGCGAACTGTGCGCAGAATCCATTAAACGTCTAAAGGA
AATGGTGACCAGCCAGAGGAATATGCCCATGGGTGTATTCGAATCTATAG
CTGATGATTCTGAGGCACCTGAAAGGCCAGAGGAGCCGGCCAGTTTCGAT
CCGCTGCTGAATAACAAACTAGAGATGATTGACAACGAGGAGGATGTGTT
CAAGTTGCTGGAAAAAGTTGACAAGGAACTAGAGGAGCATTCAAGGGACC
AAAGCGAGGAGCACTTCTCCAGTGCAGAGCACAACGGACTGGAGGAGGAG
AAAAAGGAGTCGGAAGGGTTCAACAGCGACGATGAGCAGGCCATGGGGCA
GCGACGGATTGCGAACGACAAGCGTAAACTGTTTCGCCTTATGAGCTGTT
CCATCTGCCAGCAAAAGTTCAAAAAGCAATCAAAGTTCGAGGAGCACATG
AAGCACCACAATGACCTGTTGCCGTTTCAGTGTCAGGAGGAAAGCTGCCG
AAAGGGCTTCACCACAGCCGGTGCACTGCGTTTGCACGTGGACTATGCGC
ACTCCAAGAATGAGGATACGGTTCCCTGCACCGTGGAGGGCTGTCAATTG
GTTTTTTCCCGTCTCCGGCTGCTGACCATTCACTTGAAAAAGGTTCACAA
CCAGGCGAGGGTTATTGCTCCGCGGGGGTGAACAGTCTTGCAAGGAATGC
GGCGTGTGTTTCGTTGCCCGGTGGCTATGAAGAGCACATGTACACGCACA
CGGGCGAGAGCTTCCCTATCGTGTACATTTGCGCAGGCTTTACATCATAG
TGCCTAAAGATCATCTCTCGCATGCTGCATCAGACTACGTGTGTCAGTAC
TGCGGATGCAAGACACCCGCAGATGGATTAGCATTTTGATCCACCCAACG
GATCAGGTATCCGCATCTGCCACTATGCACTACGAACGGTCTAAAGAGAG
ATCCATGTAAATCGTCATGAAATTCCGAATTTGTCTGTGCCAGATACTGT
GG
FMO01363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7386-RA | 2247 | CG7386-RA | 70..1134 | 9..1056 | 4800 | 97.7 | Plus |
| CG10274-RB | 3034 | CG10274-RB | 453..535 | 345..427 | 220 | 84.3 | Plus |
| D19A-RA | 3233 | CG10269-RA | 282..353 | 140..211 | 210 | 86.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6189814..6190777 | 9..970 | 4550 | 99.1 | Plus |
| 3L | 28110227 | 3L | 6181295..6181377 | 427..345 | 220 | 84.3 | Minus |
| 3L | 28110227 | 3L | 6188771..6188842 | 211..140 | 210 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:43 has no hits.
FMO01363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:34 Download gff for
FMO01363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 58..1140 | 9..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:26 Download gff for
FMO01363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..1152 | 9..1070 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:50 Download gff for
FMO01363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7386-RA | 70..1152 | 9..1070 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:50 Download gff for
FMO01363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6189814..6190833 | 9..1017 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:26 Download gff for
FMO01363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6182914..6183933 | 9..1017 | 98 | <- | Plus |
