FMO01364.5prime Sequence
1227 bp (1044 high quality bases) assembled on 2008-03-18
> FMO01364.5prime
CAGTCGACATGTCCAGGTCGCGTTCATCCGCTAAAGCCGTGCAGTTCAAG
CACGAATCGGAGGAAGAGGAAGAAGACGAGGAGGAGCAGCTGCCTTCCAG
GAGAATGCACTCTTACGGAGACGCCGCGGCCATCGGAAGCGGGGTGCCGG
CCTTTTTGGCCAAATTGTGGCGCCTGGTGGACGATGCCGATACCAATCGC
TTGATTTGCTGGACCAAGGATGGCCAAAGTTTCGTTATTCAAAATCAAGC
GCAATTTGCCAAGGAACTATTGCCACTAAACTACAAGCACAACAACATGG
CCAGTTTCATAAGGCAATTGAATATGTATGGATTCCACAAGATCACCTCT
ATTGACAATGGCGGACTACGTTTTGATCGCGACGAGATTGAATTTTCGCA
CCCATTTTTTAAGCGCAACTCGCCTTTTCTACTTGACCAAATCAAAAGGA
AAATATCGAACAACAAAAATGGTGACGACAAAGGTGTCCTGAAGCCGGAG
GCCATGTCGAAGATTCTCACCGATGTGAAAGTCATGCGGGGTCGTCAGGA
CAATCTGGATTCGCGCTTCTCCGCCATGAAACAGGAGAACGAAGTGCTGT
GGCGCGAGATAGCCAGCCTGCGCCAAAAGCACGCTAAGCAGCAACAAATA
GTCAACAAACTGATCCAGTTCCTCATTACCATTGTGCAACCGTCGCGCAA
CATGTCTGGCGTGAAACGCCACGTGCAGCTGATGATCAACAATACGCCGG
AAATTGATCGTGCACGGACCACCAGTGAGACCGAGAGCGAGAGTGGCGGC
GGACCGGTTATCCACGAGCTTAGGGAGGAGCTTCTTGATGAGGTGATGAA
TCCATCACCGGCTGGCTACACCGCAGCCTCACATTATGACCAAGAGAGCG
TCTCTCGCCTGCCGTTGAGCGTCCGCGATCTAACATGAGCATTAGCTCGC
ACAACGTCGATTATTCGAATCAGAGTGTGGAGGACTGCTGCTCAGGGAAA
TGGAACCGCTGGCGGTATATCTAGTAGCGAGCCGCTTCTCCATGGCCAAA
GTGTGAGTCATCGCGCCAACATGATGTCTACCAGTCACCGGAGGGCCCGA
TTCTCATGTCAGGAGGGGCCAACGTCGCTTATACAAGAGACGAATGTGCC
TCACGGCCATGGTGCGGAACGAACCAAGCGTCACAGCTAGGGAAACTGCG
CAGCTCAAGCAACGGACAGAGGAGAGC
FMO01364.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsf-RA | 2771 | CG5748-RA | 244..1372 | 9..1122 | 5175 | 98.1 | Plus |
| Hsf-RD | 2897 | CG5748-RD | 244..1372 | 9..1122 | 5175 | 98.1 | Plus |
| Hsf-RC | 2838 | CG5748-RC | 257..1385 | 9..1122 | 5175 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18132145..18132941 | 1110..328 | 3325 | 97.1 | Minus |
| 2R | 25286936 | 2R | 18133870..18134080 | 219..9 | 1055 | 100 | Minus |
| 2R | 25286936 | 2R | 18133004..18133114 | 327..217 | 510 | 97.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:01 has no hits.
FMO01364.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:35 Download gff for
FMO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5748-RA | 241..1375 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:43 Download gff for
FMO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1391 | 9..1126 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:52 Download gff for
FMO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsf-RC | 257..1391 | 9..1126 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:52 Download gff for
FMO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18133871..18134080 | 9..218 | 100 | | Minus |
| 2R | 18132126..18132941 | 328..1126 | 97 | <- | Minus |
| 2R | 18133004..18133112 | 219..327 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:43 Download gff for
FMO01364.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14021376..14021585 | 9..218 | 100 | | Minus |
| arm_2R | 14019631..14020446 | 328..1126 | 97 | <- | Minus |
| arm_2R | 14020509..14020617 | 219..327 | 97 | <- | Minus |
