FMO01366.5prime Sequence
1231 bp (946 high quality bases) assembled on 2008-03-18
> FMO01366.5prime
TATAAAACGAAGTTATCAGTCGACATGACTGTCTGTGTGCTCTGCCTGGA
CAGTAGCAATGCTGGCTACGGCCTACAATCCGAGGAAGGCGTCCGTCTGA
ACATTAGGGCGACCATCCACAAGCACTTCGCGTTCTCCGAGGTTCTTACG
GCTGGCGGTGATGCTGAGGTCTGTCGGGAGTGCTGGAACTGCGTTAGCAG
CTTCGAGGAGTTTCACCAGCGCGTCTCCTGCCTGCACCGGCAGCGGAGCA
GCGATTCCAAAAGCGAACCCATCGAATTTTGCGGTCAGACAGAGGAGGCC
ATCATTAATCCGCTATATTCTGTGGAGTTGGACGCGTTGGCGGAGGCCTT
TTTTGCGCCCAGTGAGGTCAAGGTGGAGGTGAACGAACTAGAACCCCTGC
CCAAGGTGGAACTCTTGGAAGACCCAGTTAAAACGTTTTTCAGAACAGCT
CCGAAACGGTTGGGTGTCCCAAACGAAGGCTCACCACACTCGAAGCGGCG
CATTAAAAACGAGCTGCCAGTGGATAGTGACTCGGATGCACCTCTGGCCG
ATTTTTTAAACTCGGATTCAAAGAGAAGTTCAGTTGGACCCGCAAAGAAC
AGCGAAGCGAACAAGGGACGCCAGCTACGAAGGAGCGCAAGAAGAGGACG
GCCACCCAAAGCTAAGCCGGAATCGGCTCCTTCCCCAAAGAAGGAACTGG
ACTCCGAAGATGGCGAAGAAAATGCCAGGGATAACAATGACATGGAGTTC
GTGGCTCCCGAGGCTGTCTTGGGCACTGACGACAGCTCCAGTTCCTCCAG
TGAGAGCAGTGGAGAGGATTCCGACCACAGCCTGCCGGACATAGAGCCTG
AGGAACGTTACGCTGAAATTCCAAGCGGGTTGTGGTGGAACCTAAGAAGT
ACCGAAAAGGGAAAAGCCACTGGTTCCACTCGTTCGTCTGAGTCGGAGGA
AGATGGACGGGAGGAAGCTCCAGCAGACGAGTACGATGAGAATTATCCTG
CAGTCTTCAAAAGGTTCCGTGCCTTCTGTGCAATCTGCTGGTGCAAACTT
TGCGGAATGCGACGCATCAAGCGTTCCAACAAATCGAATCTTGCTACATC
GATGCTTGCGGGAGAAAGTTCACCTGCGCAGGCTTGGCCGAACGTCTGAT
CCAGATCGATACGTATGTGCTCTGGGTCGGGGCGTATTCCAGAGACTCGG
CGGCCCTGGGAGGGTCTCGCCAGATCGATAC
FMO01366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4707-RA | 2248 | CG4707-RA | 118..1252 | 20..1141 | 4975 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24605732..24606723 | 1121..140 | 4040 | 96.4 | Minus |
| 2R | 25286936 | 2R | 24606783..24606906 | 143..20 | 605 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:27:13 has no hits.
FMO01366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:37 Download gff for
FMO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 113..1255 | 20..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:59 Download gff for
FMO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 118..1260 | 20..1147 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:58 Download gff for
FMO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4707-RA | 118..1260 | 20..1147 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:58 Download gff for
FMO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24605701..24606721 | 142..1147 | 96 | <- | Minus |
| 2R | 24606785..24606908 | 14..141 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:59 Download gff for
FMO01366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20493224..20494244 | 142..1147 | 96 | <- | Minus |
| arm_2R | 20494308..20494431 | 14..141 | 96 | <- | Minus |
