FMO01367.5prime Sequence
1190 bp (1015 high quality bases) assembled on 2008-03-18
> FMO01367.5prime
CAGTCGACATGCTGCCGCAGCAGTACTGCCTAAGGTGGAAGTACCACCAT
AGCAATCTGCAGACCATGTTCTCCCAGCTGCTGGATCGCGGTTGCTTCTG
CGACGTGACCCTGGCCTGCGAGGGTCAGCTCATCCGCGCCCATCGCGTCG
TCCTGTGCGCCTGCAGCACCTTCTTCGACGCCGTGCTCTCCAACTACGCC
AGTGAACGTGATCCGATCATCATCATGAAGGACGTTACCTTTGCGGAGGT
CAAATGCCTCATCGAGTTCATGTACAAGGGCGAGATCAACGTGGAGCATT
CCAGCCTTCCCTCGCTGCTGAAGACCGCCGATGACCTGAAGATCAAGGGC
CTGGCCGAGGTGACCTGGCGCGATGACGAAGACGGACCGCCGCCACCAAT
GGCCGCCGCCGAGTTTCACTCACCGCCGCGCAGCTTGGCAGAGAGTTACG
CCCAGGACCTAATCCTTCAGCATCAGCAACAGCAACAGCAGGGCCCAGCT
GCTCCACCCTTGAATTTGCACAGCTCTGCTGCGCTCTTGGAGAGAGATCG
AGAACGGGAAAGGGAACGTGACCGGGAGCGTCTCTCGCCGGGGATGGAGG
GTGTACTGGGTCGCATGCCCGTGATGACGCCGCTGACTGGCGCATCGGGT
TCGGCAGGAGTGGGTTCGGTATCCGGTGGCACATCGCTCGAGGGCGTCGC
TCCCGTGGAGCACTTTCTGGGTCCCAAACGCAAGCGTGGTCGTCCGCCGC
TAGACGATGCCTATGATGTTTTCAATGTACGCAAGCTGGCCCAGTATGCC
GCCAATCTGGAGCCCGCCCAGCGTGCCTACTTGGAGACGGCGCGTCACTT
TACGGAGGAGCCGCCACTGGCCGCCCATGCCGCCTCGATGGCCTCCCCAC
CCGCCGCCTGCCCGCCGAAACAGCGCAGCGTCTACGTCACAGCAGCAGCA
GCAGCACAGCTGCTACAGTCGGAGAGCAGTGACCAGAGCAGCGGCTGCTG
ACAGATTGTCAATTTGAGCAAATGCAGTGCACGCCAACTGCTCAGCGATG
GCGATGCTAACAGCAGACGAGGGCGGTGGATGATCGCTACGGCAGTGCTA
ACACCGCCAGCAGAACGGACCAAAAGCTGAAGATGCAAGCTCGAGCATGC
ATTACGCCATCTCGCCCTTTATGAAAGATCTGGAGAGGTA
FMO01367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3726-RB | 3129 | CG3726-RB | 632..1773 | 8..1125 | 5065 | 97.6 | Plus |
| CG3726-RA | 2901 | CG3726-RA | 569..1710 | 8..1125 | 5065 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5939035..5939517 | 296..778 | 2400 | 99.8 | Plus |
| X | 23542271 | X | 5938669..5938960 | 8..299 | 1460 | 100 | Plus |
| X | 23542271 | X | 5939625..5939835 | 779..986 | 905 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:33:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2392 | 468..490 | 115 | 100 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1556..1592 | 464..500 | 113 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6862..6898 | 452..491 | 112 | 80 | Plus |
FMO01367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:38 Download gff for
FMO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-RA | 546..1698 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:13 Download gff for
FMO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-RA | 563..1715 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:41 Download gff for
FMO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3726-RA | 563..1715 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:41 Download gff for
FMO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5938663..5938960 | 1..299 | 98 | -> | Plus |
| X | 5939039..5939517 | 300..778 | 100 | -> | Plus |
| X | 5939625..5940000 | 779..1129 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:13 Download gff for
FMO01367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5832696..5832993 | 1..299 | 98 | -> | Plus |
| arm_X | 5833072..5833550 | 300..778 | 100 | -> | Plus |
| arm_X | 5833658..5834033 | 779..1129 | 92 | | Plus |
