FMO01368.5prime Sequence
1201 bp (1002 high quality bases) assembled on 2008-03-18
> FMO01368.5prime
CAGTCGACATGGACGCCGCCGTACCGGATCCCGCGCTCCTGGCGATGAAC
AAGCTGAACAAGGGCTCCAAGTGCCGAGCCTGTCTATCGGTGGACAGGAA
AACCGTGCAGTTGAACGCCGAGGTGCCCAACCTGCAAAAGACGCGTACCT
ACGCCCAGAGCCTGAAGCAGTGCACCAACCTGGACCTGCGGGTCATTAGT
CCAGGTGGCTACCTGTGGCCGATGCAAATCTGCGTGCGCTGCTGTCGCGC
CCTGGAGGTGGCTATGCACTTTGTCGAAATGGCCCTGGAATCGAATCTCA
AGCTCCAAGCCGAAGCCAAAAGCGTAAAGCTGCCCAGTCCCACTGGAGAG
CTTAAACGAAAGGCCAGCAACGAAACGATACCATGGAATCAGTTTAGCCA
GGAGTTCGAGCAGTTTGTCGAGGGCTATGAGGGTCCCATCGAGGAGAATG
TCCTCTATATGCGAGGAACCAAGGTGCCGCGGCTGGATGTCGACGCTTCT
TCGAGCAGCGAGACAGCGCCAAAGGAAGATGAAGTAATACTCTTCGACGT
CAAGTATGACACCAATGATCTGGAGGAGGAGGACGAGAACGACGGCTCGG
ATGCCAAGAACAATGAGACCTTCTTCGAGAACAGTATTACACCTGGAGAG
TCAGTTATGGTCGTCTCAGTCGCGGAAAAAGCTGTCGAGAATAATAACAA
TTATAATTTCAATAACAAAAACGGCGATGTGACGGACGAGGAGTGCGACC
TTATACAACGCGCTCTGGAGATGACTCTAAACGACGATGGCTGTAGCCAA
AGTCCCAAGAACGAGGCCAGCAATGAAACTCAGCTGAAATCCAATGGAAT
AGAGGTCTCATCGCCACTCTTTATTAGCTGGCCACGACTAGCAGCACGAC
GGGTATATACCCATTCTGAAATGCAACATTTGCCATACACGCATACCGAT
GCGAGCAGTTAAAATTCACTACAAAGTATTCACAGATTTCTATGATGAGA
CGATTTATGACTAACAAAATCATACTTCAGTGCCGACTGCATAGTAGAAA
ACGAAAGACAGTCTGAAATGCAGCATCTCATCGATCCCCCAAAAATGGTG
AATTGGAAGTACTGTTATTGCAGCCAACTGCCGGTTGCCAGACTCAAGGA
ATGCGCCTCGCCTAAAACATACCCCGGGGTCACCCTCGGTGCAATTTTCC
G
FMO01368.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12942-RA | 2481 | CG12942-RA | 144..1300 | 8..1132 | 4915 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10894602..10895128 | 8..534 | 2635 | 100 | Plus |
| 2R | 25286936 | 2R | 10895190..10895498 | 532..840 | 1545 | 100 | Plus |
| 2R | 25286936 | 2R | 10895552..10895715 | 841..997 | 470 | 95.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:28:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 12..47 | 686..721 | 117 | 80.6 | Plus |
| mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 7050..7085 | 686..721 | 117 | 80.6 | Plus |
FMO01368.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:39 Download gff for
FMO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-RA | 86..1100 | 1..1007 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:50:34 Download gff for
FMO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-RA | 138..1152 | 1..1007 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:07:43 Download gff for
FMO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12942-RA | 138..1152 | 1..1007 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:07:43 Download gff for
FMO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10894596..10895128 | 1..534 | 99 | -> | Plus |
| 2R | 10895193..10895498 | 535..840 | 100 | -> | Plus |
| 2R | 10895552..10895727 | 841..1007 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:50:34 Download gff for
FMO01368.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6782101..6782633 | 1..534 | 99 | -> | Plus |
| arm_2R | 6782698..6783003 | 535..840 | 100 | -> | Plus |
| arm_2R | 6783057..6783232 | 841..1007 | 94 | == | Plus |
