FMO01374.5prime Sequence
1213 bp (957 high quality bases) assembled on 2008-03-18
> FMO01374.5prime
CAGTCGACATGGAAACCGAGTCGATGGCTCCAAGCAGCAGTGCGGCGGCT
GCAGCCACCAAGCTCCTGGTGGAGATCACCACCGACGGAATACCCAAGCT
GCACTGCCCGGTGTGCAACAAGGCGCTGGTCTCCCTAGCCGGATATGTGA
AGCACGTAAAGAAGCACCAGCCGCCGGGCGGCTTCGAGTGCCGTCACTGC
GATGCTCGGTTTTGCCACGAGGAGGAGCTCACCCAGCATGCAAAGGATGA
GCACGGAGTCACTGGCGCGGTAGCTGGACAGGAGCGAAAGCCTTTCGTTT
GTGAAAAGTGCGGCGCGGAGTACAAGTACCAGGAGGCATACCGTCGCCAC
TGCAGGACCAAGTGTGGCGAGGAAAAGCTACCCAGGGAGGAATCCCGACC
AATGGAGTGCAAGTGCTGCTACACCCGCTTCTCTAGCGCCTCTAACCTAT
CCAAGCATCGACGCAGTCGTCCCGACACCTGTGGACAGCCGGAATACGAT
TCGCCCGGTTCATCCGATGGGATGAAGAAACATAAGGCCTTCCGCAAGAA
GGACAGAAACAGGGACTCTGATGATGAAGATACCACCAGCGAAGAATCGG
AAGATAGCGATGATGACATTCCTCTGGCCAGTCGTCTGAAGACGAAGCTC
AAGCAGGAGAGCCAGAACTCGGACTCGGGCGACGAGTGTCCCGACTTCGA
CCCAACAACAGTGAGGACGATGCGGATGCATCCGGATCCAGCTTCCTCCG
CCGGCTATGGTCAAGGTGGAGGCCTTCGACGAAGAAGATTTCGAGTACCA
GGACGCCAGCATGTATGTGAAGACCGAAAGCACCGATATCTTTAGCAACG
AAAAGGATAAGCTGCTGGATGTGCTGCTCAATGAGGTGATGGCTTAAAGC
CCTTTGAGAGCCTAAAGGTGGAACAGGGACGCTGGTATACTAGACGAAAT
CGCGGCCGTGCAGCTAGTGGAGTTGCAGAAGAAGATGTCTTAGAACTGAT
GTGTTCATCAATGGAAAATCTCCGGGACATGAAAGCGGGGCAGACCGTCA
AAGAAAAGATTACTGTTGTCAGAAAAAGTATCGCAACGAAACCTCCTTAA
TTCGCTCCTCGCTGACGATTCATCGGTATCTAACGATACCTAAATCGCAA
ATGGACTAAGGACTGCCCTTAATTGTGATCACAGAGTGAAAATCTCTTGG
GAAGAGGTTTCTT
FMO01374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| zf30C-RA | 2976 | CG3998-RA | 405..1534 | 5..1126 | 5030 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9760120..9760827 | 386..1086 | 2845 | 96.1 | Plus |
| 2L | 23513712 | 2L | 9759679..9760054 | 12..387 | 1880 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:07 has no hits.
FMO01374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:43 Download gff for
FMO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3998-RA | 404..1538 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:47 Download gff for
FMO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 400..1534 | 1..1126 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:26 Download gff for
FMO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zf30C-RA | 400..1534 | 1..1126 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:26 Download gff for
FMO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9759671..9760053 | 1..386 | 98 | -> | Plus |
| 2L | 9760121..9760868 | 387..1126 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:47 Download gff for
FMO01374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9759671..9760053 | 1..386 | 98 | -> | Plus |
| arm_2L | 9760121..9760868 | 387..1126 | 95 | | Plus |
