FMO01375.5prime Sequence
1227 bp (991 high quality bases) assembled on 2008-03-18
> FMO01375.5prime
TAAAATACGAAGTTATCAGTCGACATGCCAAACATGTCCAGCATCAAAGC
GGAGCAGCAAAGCGGTCCTCTTGGAGGAAGTAGCGGCTATCAAGTACCGG
TCAACATGTGCACCACCACAGTCGCGAATACGACGACCACTTTGGGAAGC
TCCGCCGGGGGAGCCACTGGCTCCCGGCACAACGTCTCCGTGACAAACAT
CAAGTGCGAACTAGACGAACTACCGTCACCGAACGGCAACATGGTGCCGG
TTATCGCAAACTACGTTCACGGTAGCTTGCGCATTCCACTCAGTGGACAT
TCAAATCATAGGGAGTCCGATTCGGAGGAGGAGCTGGCAAGTATTGAGAA
CTTGAAGGTTCGGCGAAGGACGGCGGCGGACAAAAATGGTCCTCGTCCAA
TGTCCTGGGAGGGCGAGCTGAGCGATACTGAGGTCAACGTTGGCGAAGAG
CTGATGGAAATGGAGCCAACAATTAAGAGTGAGGTGGTCCCTGCTGTTGC
ACCCCCACAACCCGTCTGCGCACTACAACCGATAAAAACAGAGCTAGAGA
ACATTGCAGGCGAGATGCAGATTCAAGAGAAGTGTTACCCCCAGTCCAAC
ACACAACATCACGCTGCCACAAAATTAAAAGTGGCCCCGACGCAAAGTGA
TCCGATCAATCTCAAGTTCGAACCGCCTCTGGGAGACAATTCTCCGCTAC
TGGCTGCACGTAGCAAGTCCAGCAGTGGAGGCCACCTACCACTGCCAACG
AATCCCAGTCCCGACTCCGCCATACATTCCGTCTACACGCACAGCTCCCC
CTCGCAGTCGCCTCTGACGTCGCGCCACGCCCCCTACACTCCGTCTCTGA
GCCGCAACAACAGCGACGCCTCGCACAGTAGCTGCTACAGCTATAGCTCC
GAATTTAGTCCCACACACTCGCCCATTCAAGCGGCGTCATGCCCCACCGG
CCGGCCCGCTCTATGGCAACCACCATGGTATTTACCGCCAGATGAAGTGG
GAAGCCTCATCCACTGTGCCGTCCAGTGGGCAGAGGCGCAGACCTGAGTA
TGGACTCCTGCCTCTAGCATCTGAACAGTGGCTTAGGATCTCGCACCCCC
GCATCTCGCGCATATCACGTCAGCGTGAATCACTCGCTGCCAACGGCGGG
GACAGATCACGGATCATACGGATTTCCCTGGAGTCTTGCAGGCTCTTCAG
GCCACGGAGCAAATTCGGAGAACCATA
FMO01375.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hr39-RD | 4828 | CG8676-RD | 556..1663 | 25..1124 | 5120 | 98.1 | Plus |
| Hr39-RA | 3291 | CG8676-RA | 498..1605 | 25..1124 | 5120 | 98.1 | Plus |
| Hr39-RB | 4844 | CG8676-RB | 572..1679 | 25..1124 | 5120 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21253670..21254714 | 25..1069 | 4930 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:20 has no hits.
FMO01375.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:44 Download gff for
FMO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8676-RA | 511..1633 | 25..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:01 Download gff for
FMO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..1694 | 25..1137 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:00 Download gff for
FMO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hr39-RB | 572..1694 | 25..1137 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:00 Download gff for
FMO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21253670..21254792 | 25..1137 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:01 Download gff for
FMO01375.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21253670..21254792 | 25..1137 | 97 | | Plus |
