FMO01376.5prime Sequence
1207 bp (1047 high quality bases) assembled on 2008-03-18
> FMO01376.5prime
CAGTCGACATGGCGGCTACACCACCAATGCCGCCCGGATCAAACACCCAT
CAATTGAATGGCAAAACAGTCGGCAAGGGGAACCCCCTAGCTGAGGCGAT
CAATCAGCACTTTCAGCGGAAGAAACAGAATCAGCACCAGAGTCCCAACC
CCAGTCCAAACCCGAATCCCAACAGTCCCGCCAGCCGCAGCGGGAGCTAT
GAGCAGCTGGAGCTGCTGGATCACGCAACGCATCCACAGCAACAACAGGA
AGCCAGCAGTGGCAAGGCCAAGCCGAGCTGCCATTGCACCAACATTAGTA
TTATGCACCTGTTTCATGAGATGAAGCAGGAGTTCCCCACGATACCCGAT
GCCATAGTGACGCAATGCGTCAATGAGAATTGCCATCAGCGCGAAAACTG
TATCCAGATGTTGAGGAAGGAGCTCGCGCTTCATCCTATCCCAGTGCAGA
GCTATCCGGCAAAGGTGCTGCAGCAACAGCAGCAGCAACACCACCAGAAT
AGGCAGGCCAAGCCTCCCACGCCGCTCAAGCCGTCACGGATAGCACCACC
GCAGCCGGAAGCTGTGCTGAGCAATGGAGTGGCTACGCCGCCAGGTGTTG
GTAGCCCACATCCTGATACGCAGCCCAGGCCGCGACCCACGACGCTCAAT
CTGCAACGTCAGTTTAGCACTCAGCTGCAGCAAAAGATTATGCAGCGCCA
GCAGCGACAGCAGAGGGATCACCAGCCAGCCCAGCTGACGCCCACTTCCT
TGAGCAAGCCGCTACGCCGGGCACCGCCACTTCCGCCGCCACCCAAACCG
AAGCCCGGCAGCTTCTCCAACGATTCCTCGTGTCTCACCAGTCCCATGAG
CTCCAGCGAATCGGAGCTTTCGCTCAACGCGGTCCCCTTATCGTCACCAA
CGTCGGCGGCGGCTACTGCTGCTGCGGCGTCAGCAGCAATCGCATCAACG
CAACAACAACCCTCGCGTTGCGACATCGTTCAGTCATAACGCTACAGCAG
AGCCGCGTACGCGCGCGACTTTCGCAGCATTGACTTCCGCGACGACCGCT
GTACGCCGCGCTACCTCGCCAGTTCGCAGCGTCACAATGCCTGTGAAGCA
AGACCTTAACTCGGTCAATTACTGGCCAAGCCGACGGTCGCAATCGCAAT
TGACTCACGCGTTCGGCATTGCAAGGCAATTGGGAATAATATAATCTGAT
GGTGATA
FMO01376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:26:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Tab2-RB | 3305 | CG7417-RB | 419..1505 | 9..1085 | 5170 | 99 | Plus |
Tab2-RC | 3081 | CG7417-RC | 363..1449 | 9..1085 | 5170 | 99 | Plus |
Tab2-RA | 3249 | CG7417-RA | 363..1449 | 9..1085 | 5170 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19299200..19300230 | 9..1036 | 4990 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 22:26:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2458 | 146..300 | 172 | 60.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6892 | 467..560 | 136 | 63.2 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 938..1073 | 427..562 | 132 | 58.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6701..6784 | 420..506 | 130 | 64.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6829..6867 | 461..499 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6816 | 467..559 | 122 | 61.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2464 | 457..559 | 120 | 61 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6825 | 468..505 | 118 | 78.9 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7958..7993 | 471..506 | 117 | 80.6 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9402..9437 | 471..506 | 117 | 80.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2787..2844 | 457..513 | 116 | 69 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1115..1146 | 468..499 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2363 | 468..506 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6805 | 468..506 | 114 | 76.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1127..1171 | 468..511 | 114 | 75.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2400..2441 | 468..506 | 113 | 78.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1096..1132 | 470..506 | 113 | 78.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2380 | 471..505 | 112 | 80 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2440..2483 | 463..506 | 112 | 72.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6821..6916 | 468..560 | 112 | 60.4 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3259..3310 | 440..493 | 111 | 72.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2351 | 467..506 | 110 | 75 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1105..1144 | 467..506 | 110 | 75 | Plus |
FMO01376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:46 Download gff for
FMO01376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7417-RA | 324..1417 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:10 Download gff for
FMO01376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tab2-RA | 363..1456 | 9..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:20 Download gff for
FMO01376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Tab2-RA | 363..1456 | 9..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:20 Download gff for
FMO01376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19299200..19300230 | 9..1036 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:10 Download gff for
FMO01376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15186705..15187735 | 9..1036 | 99 | == | Plus |