FMO01377.5prime Sequence
1228 bp (1065 high quality bases) assembled on 2008-03-18
> FMO01377.5prime
CAGTCGACATGGGCTCCTCCAAGAAGCACAAGAAAAACAAGTCGGAGCGA
CGCGAGAAATATGAAGAATACAGTCAGCACCAGGACCCGGCTCAGCTGCA
ACGAGGTCTAAAGCTTATCCTTAAGGTGGGCTCGAATGCCACGCCGGAGT
ACAGTGCCAATTCGCCAATGGTGGACGGAGGACCGCCCACAGCAGCCGAG
GCCATGATGTCGCCAGTCCCCGAGGAACTTCAAGATCACCAGGGTCATCG
CGAGCGCCACAAAAAGTCAAAGAAAAAAAAGAAGAAGAAGGATCGCGAGA
AGAAGCACAAACACCACAAGGAGAAACGGCACAGGAGCAGAGATAGACAT
CGGGACGCTGGATCGGACGAAGATATGATGGCCGGCGCTGACGATGCCGC
TTGCAGTGGATTCGCCCCATCGTCTGTCGCTCCACCGGCCGCCGATCCCG
ATTCCAGCCAAGATGGATTTAGCTTTATGGACGATGATCAATCACAACCG
CTGCCAGAGAATATTTTGTTCTTCGCCGGCATCACCACGGATAACTCGCC
ATCAAACTGCCCCGTAACAAAGCCAATAGCTCCACGCAAGCTGGATGATA
TTCTGATGGGCTCTTCGCCCAACTCGTCGTCGTTGCAATCTTCCTCCCTG
GGTTTAATAGGCAGCAGTCCCACCAAGCCACTGCCCGACCTTTTAATACC
TTCACCGTCGACGCCAGGAGGAGCCAACTCCCTTAATGCCCTTACACCGA
AGGCTCTCGAGGCGCCAAAGACGCCCAGTAGTTCCAGTGAGTCGGGTAGA
GAGCCACGGAGCTGTGTGCTCAAGCTAAAGCAGCAGAAATCGCCGTTAAA
CAAACTTCTGGAGCACCTGTTGCGCTTCCTGGAGAAGCGGGATCCCCATC
AGTTCTTCGCTTGGCCGGTGACCGATGACATGGCGCCCGGTTACTCTTCA
ATAATCAGCAGACCCATGGACTTCTCCACTATGCGACAGAAAATTGATGA
TCACGAGTATACCGCTTTACCGAGTTCACTGATGACTTTAAGCTGATGTG
CGAAATGCCATCAGTACACCACGTGATACGTTTATAACCAGGCAGCTAAC
GTCCTACCTCCAAGTGAATGAACATCCTGCACCTGGAGAACCTCTATGAA
AGCCTGGAACCTATCTGTTATGAGGGGAGCTCACAGCCGAGAACTTGGCC
TTGAGATTTAGAGTCTCGACAGACAGAA
FMO01377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7154-RA | 2834 | CG7154-RA | 127..1335 | 9..1205 | 5450 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7783297..7783921 | 65..689 | 3125 | 100 | Plus |
| 2L | 23513712 | 2L | 7783975..7784341 | 690..1055 | 1785 | 99.7 | Plus |
| 2L | 23513712 | 2L | 7782991..7783048 | 9..66 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:23 has no hits.
FMO01377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:47 Download gff for
FMO01377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 135..1255 | 9..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:19 Download gff for
FMO01377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 127..1247 | 9..1122 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:39 Download gff for
FMO01377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7154-RA | 127..1247 | 9..1122 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:39 Download gff for
FMO01377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7782991..7783048 | 9..66 | 100 | -> | Plus |
| 2L | 7783299..7783921 | 67..689 | 100 | -> | Plus |
| 2L | 7783975..7784414 | 690..1122 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:19 Download gff for
FMO01377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7782991..7783048 | 9..66 | 100 | -> | Plus |
| arm_2L | 7783299..7783921 | 67..689 | 100 | -> | Plus |
| arm_2L | 7783975..7784414 | 690..1122 | 97 | | Plus |
