FMO01380.5prime Sequence
1184 bp (999 high quality bases) assembled on 2008-03-18
> FMO01380.5prime
CAGTCGACATGATGAACAACCATTTTCACTTGCAACACGATCATCCACCG
CAGAACGTGGCACATCCGTTCATGCAACAGCCGAGTACCGCTGTCCCATC
AGCTCCTCCGGCCACCTACGGCTACTTAGCACAGCCAGCTGGCCAGCAGC
CGCAGTGGATGACCACCACCTACCAGATCCTGCCGCCCAGCGTAGGACCT
GCCACGGTGGCCAAGCGATACTATGCCACCACTGGGCCGCAGACCACGCA
TCCCACACATCCCAGCACCATCCAGATCACGAACAGTTTCGCTCAGCAAT
CAACGCCACCGAAGCAACAGGCGGCAACAAGCTGCAGCCCATTCAAGGCC
AACAACATCCGAATCATCTCGACGGCGCCAAGTGTATACAGTCTGAATAA
GCCGCCACAGGAAGCGCACTCCACATATGCTCCCGTTCAGTCGTACTACT
TGCCCAGTGGCGGTGGCCAAACTGCGGGACAAATCAATCTACTGGCGGCC
AGCGGAACTGGCAAGCAACTGCAGCCGCCGCCGCTGGTGCCTGTGACCAA
TTCCACCTCACCGCCCTCCACCGTCGTGTTAGACCGCATAAACATTTGCA
TCAATAACCACTATACGGAGACGCCCACTTCGCTAAGTTCATCGCTTACC
ACGGCCCAACAACCTTCGCCCATCATACCGGCCATCCAGCACAAGGCCAT
CCTGCCCCTCATCGACAGCAGCACGGCGGATAGCAGCAGCTGCAGCAGCA
GTTCTGTATCGAGCAGCAGTTATAGTGGTACCGCGACCACCTCAGCAGCA
GTTGTGATTGTGGATGAGCCGGATTCAACGACCACAACGCCACAGACACC
GCCAACTACGCCGGAGGCCATGAGTTCACCCGGTAAAAGTTCGCCCTCGC
CTCCGCTACTAGCCACGCAATCGCTGCTCAAAGGCGTCACTCATGAAGCC
AGCTTCAGACGTCGAGCAGCACGCACGCGCACCCTCCATCACACACACGC
GCGCACCACAGTTGCCGCTCCCTCGCAGCGTCACGTATGCGCTTCAGAGG
ACGTTCTTCATCAATGCATTGATGCGATTACTGGCACATTATGACAGACA
GCGATCAATCTTATCCGCTGAGTACTTCGACAATGGATGTACGGATACGG
CAAGCTTGTGTGGGGTAATCTCGAATATCCTCTA
FMO01380.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pcl-RB | 4384 | CG5109-RB | 499..1645 | 9..1119 | 4750 | 96.2 | Plus |
| Pcl-RA | 3836 | CG5109-RA | 499..1645 | 9..1119 | 4750 | 96.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18135924..18136854 | 9..939 | 4595 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:49 has no hits.
FMO01380.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:48 Download gff for
FMO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5109-RA | 488..1457 | 1..965 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:28 Download gff for
FMO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcl-RA | 491..1460 | 1..965 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:53 Download gff for
FMO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcl-RA | 491..1460 | 1..965 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:53 Download gff for
FMO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18135916..18136885 | 1..965 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:28 Download gff for
FMO01380.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14023421..14024390 | 1..965 | 98 | == | Plus |
