FMO01381.5prime Sequence
1228 bp (1019 high quality bases) assembled on 2008-03-18
> FMO01381.5prime
CAGTCGACATGGCAGCGGTTCGAGGACATCAGTATTTCAGTCTGCGCTGG
AATAACTACCAGAACACGATGACGTCCGTGTTTCAGCAGCTGCGCGAGGA
TCTCTCCTTTGTGGACGTCACTCTGTCCTGCGAGCATGGATCCCTCAAGG
CGCACAAGGTCGTCCTGTCCGCCTGTTCGACGTATTTCCAAAAACTACTG
CTCGAGAATCCGTGCAAACATCCCACAATTATCCTTCCCGCCGACATTAT
CTTCACCGACCTGAAAACGATCATCGATTTTGTTTATCGTGGTGAAATCG
ACGTCACCGAATCGGAATTACAGGGCCTCTTGCGCACCGCCGAGCAGCTA
AAGATCAAGGGACTCTGCGAAACCGCCGAGAACGCGGATGACCTGAACGA
CGCGGCCACTGCAACGATCACAGTTTCAGAGAACATACAGCAGGCGGTCG
TTGGCAATATAGTGAACGCCGCCATAGTTCCCGGAGCTCCGTCGCCCTCC
TTGGAACAGCAGCAGCAACACCACCAACAGCAGCAACAGCAGCAGGCGCA
GGAGCAGCACCAGCAACAGCAGGTGCATGCCCAGCAGCAACAGCAGCAGC
AGCAGCAAATAAACGCTGCCCTGCTTACGCAACACGGAGTGTCCAGCGGA
AGTGTATCTCTTTCCGGGCAATTGCTGAGCTCCTCGGCTAGCGGCAGCAG
CGGAAGTTTAGCCGGCGGACAGCAGGCATCACAGACGCCATCCGGTTTGC
AGCCGACGCCGCGCAAGTCTCGACTAAAGCGCTCCAAATCGCCAGATTTG
TCATCGGGCGGAGGAGCAGAAGCTCTGGAGGCTCAAGTAGCGGCTCAACG
CAGCAGCAACCGCAGCCGGCGCACCACCACCACCCGCAGACCATTCTCAT
CCAGGGCCAAATCCGAATTCCATTGTGAGCCTTCAGCAGACGGCCGACGG
CAATTACATACCAGTTTCGGGTTCTGGCGACGATTCAGACGCGAGGACCA
CGAGCACGACACACCACGGACACGGCACGGCACGGAGACATACGCACGAC
CGTCATAGCCACGAGCACAGTCACGATCACGAACACGAACTAGCGGAACA
GATCTGCAGACCGAGACCTCGGTGCCTTCGCGGGGCTCGAATCATCCCAG
GCCTGACATGCACCGCTTGACGCGTAACTTCACGCCCAGCCATCTGCGTC
TCCACTGATGTGGTATATACTCGCCGCG
FMO01381.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| psq-RN | 6336 | CG2368-RN | 762..1903 | 5..1131 | 5235 | 98 | Plus |
| psq-RM | 6336 | CG2368-RM | 762..1903 | 5..1131 | 5235 | 98 | Plus |
| psq-RB | 5367 | CG2368-RB | 762..1903 | 5..1131 | 5235 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10610544..10611327 | 318..1090 | 3410 | 98.3 | Plus |
| 2R | 25286936 | 2R | 10562024..10562191 | 157..324 | 840 | 100 | Plus |
| 2R | 25286936 | 2R | 10561801..10561956 | 5..160 | 765 | 99.4 | Plus |
Blast to na_te.dros performed 2014-11-28 20:02:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..6871 | 815..910 | 125 | 64.3 | Plus |
FMO01381.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:44 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:22:51 Download gff for
FMO01381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RC | 474..1603 | 1..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:38 Download gff for
FMO01381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| psq-RB | 758..1887 | 1..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:38 Download gff for
FMO01381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10561797..10561954 | 1..158 | 98 | -> | Plus |
| 2R | 10562026..10562190 | 159..323 | 100 | -> | Plus |
| 2R | 10610550..10611356 | 324..1115 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:22:51 Download gff for
FMO01381.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6449302..6449459 | 1..158 | 98 | -> | Plus |
| arm_2R | 6449531..6449695 | 159..323 | 100 | -> | Plus |
| arm_2R | 6498055..6498861 | 324..1115 | 97 | | Plus |
