FMO01383.5prime Sequence
1193 bp (1006 high quality bases) assembled on 2008-03-18
> FMO01383.5prime
CAGTCGACATGGACACGACACTGATGAACTTAATAGACGCTCCGCTGGAC
GAGTCCATGGATTTGTTCAAAGCGGAGGATGTCTTCGAACCGTTCGACGC
CGACCTGCACTCGGACATGCTGGACATCATCCTCAACGACATGGACCTGG
CGCCGACGCAGATGTACAACATGCTGCTGGACGAGCCTCGAACGCATACC
CAGCAGACGCAGTCCGTGGATCAGCAGCCGCAATCCGTCGAGCAACAGCC
GCACGTGAAAAGCGAGCACTCTTCGCCAGTGCACATCAAGGAGGAACTGC
ATCAGCAGCAACAACAGTCGCCGCTTCTCGTCTACAAACCAGATCCCCTC
ATAGCCACAAGCTACAATTGTCCCCAGCAACAGCCGACGGGCCTTTTGAA
GGCCGCCCAACCAACAGCCACCATACATCACATGGACGCCCAGCGGATGC
CGCCGAACACGGCGGTGTATCCCCCATCTCTGGGCAGTAGCTTTGTCTAC
CAGTCCATGTCCCCGCCCACGTCGCCGGTGGAGTCTGCGAACCAGAATGT
CAATGTCATGCAGCCCGTTGCTGCAACTCCTGCTCCCGCTTCTGCTCCTT
TGCCCCAGCAGTCGTATCCGCAACCCTTCATTACGTACAACTCTAAGGCC
GGAATGACTTCCGATGAAGCCATGTACTTCCTCTTGCAGCCCACGGTAGC
CAGTCCAACCCCATCTCCACCTGTGGCTCCACCACCGACAAGCACAGGTA
GTCGGGCCAGCAAGGTGCGAGTGGCACCACTGGCTCCGTCACCTGCCGCT
ATGGAAGTCCAGGGCAAGGTACCTATCAACCGGGTTCAACCCAAAGTGAA
GGAAGTAAAGCGCTCGGCCCACAACGCCATCGAGCGGCGCTATCGCACCT
CAATCAACGACAGATTAACGAGTGAAGACTGGTAGTGGGAAGAGCAGGCC
AAGCTGAACAAGTCCGCAGTGTGCGGAAATCAAAAGAACAAGGATCGGGA
TCTGCAACGCAGAATCACGAATCTGAAAGCAAGAGTGCAAGGCTGCTAAG
GAGCTAATGAACGCGAACGCTCAAGGGAAGAATACTCCGCTGGTATCGCT
GTAGAGCAATCAAGAAGGCGCGGGAGCCGGACATGGACGGAGTTCCGACT
GAACTGCCACGCGAACGGAGAAATCGGAATCTCTTGCCTTTTG
FMO01383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HLH106-RD | 3920 | CG8522-RD | 339..1364 | 9..1031 | 4830 | 98.5 | Plus |
| HLH106-RC | 3818 | CG8522-RC | 237..1262 | 9..1031 | 4830 | 98.5 | Plus |
| HLH106-RB | 3951 | CG8522-RB | 370..1395 | 9..1031 | 4830 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19794910..19795925 | 9..1020 | 4635 | 98.6 | Plus |
Blast to na_te.dros performed 2014-11-28 20:15:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6866 | 159..318 | 127 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6854 | 201..324 | 126 | 59.2 | Plus |
FMO01383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:48 Download gff for
FMO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8522-RC | 217..1258 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:31 Download gff for
FMO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 362..1403 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:16 Download gff for
FMO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HLH106-RB | 362..1403 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:16 Download gff for
FMO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19794902..19795914 | 1..1010 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:31 Download gff for
FMO01383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19788002..19789014 | 1..1010 | 98 | == | Plus |
