FMO01384.5prime Sequence
1202 bp (1024 high quality bases) assembled on 2008-03-18
> FMO01384.5prime
CAGTCGACATGGATCCGACGCGAGGTGACTCGCGGTACAATCTCAACTAC
TCGATGAGTAGCATAGGGCTGAGCCTGGCGGATCCGGCGGACATGTACGG
CAACCCGGCCCTGGGGGCGGGCCGCCCGCCCTCCGGTGGCCTGCTCCAGA
ACATGGGCGGCGTTCCGCCGATGCAGCGCCCCAATCCCGCGGCAGGAGCA
CCCCCTGCCCCGCAGTGCCAAACGCTCCACAGCCCACAGCACGCCTCCCA
GCAGCAGCAGCAGCAACAACAGCAGCAGCAGCAACACCAGCAGCAGCAAC
AACAGCAGCAGCAGCATCCCCAGCAGCAACGCGGCCTTAAGCGCTCCGGC
AGCGACTGCTACGAGGATCACCACCGCTCGTCCGGCGGACTCACCCTCCA
AGGACTGGACAACGTGGCCAGCGGAGCCGTCGACGACAGCGTAGACAACT
ACAACCCGCTGCCCAACAAGAAGTCTCCGCCTGCCAACGGCAAAAAGACA
AAGGGACGTGTCAAAATCAAAATGGAATACATCGACAATAAGCTGCGTCG
CTACACGACCTTCTCCAAGCGCAAGACGGGCATAATGAAGAAGGCCTACG
AGCTGTCCACGCTGACCGGGACGCAGGTGATGCTGCTGGTGGCCAGCGAG
ACGGGCCACGTGTACACATTTGCCACGCGCAAGCTGCAGCCGATGATCAC
CTCGGAGGCGGGAAAGCAGCTCATCCAGACCTGCCTCAACTCGCCGGATC
CGCCCAGTGTGGGCGGCGGCGACCAACGGATGTCGGCCACCGGGTTCGAG
GAGACGGAGCTCAGCTACAACATCGCCGACGAGGACTCGAAAGATGACCG
ATCGCCTACCTCGTCGGGCAACGAGTCGGATGATTCGTCGGACGTGGAGA
TGCCGGCGGAGGCTGCTGAGTGGCAACCAAGTTGCCGGCCAGCAAACAGA
GGTATCAGCGCTTCAGCAGCCTCATGCTCGGCGGCCACCGCTTCGTCTGG
CCACAAACCATGCAGCATTGAACTAATCAGAACTGACACCAACAGCGGAA
CCTCAACGTTCACGCCGCCGGAGGAGGAGCCTCGGCGGACAGCAAGTACG
TCTACTCCGCTGCTTCGAATTGCCACATACGCGAAAATGTCTGAAGCATC
TCTATTCAGTTCCAGGCCTCATTGCCAGGTGTCACCCCAAAAAGAGAGAG
AT
FMO01384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bs-RC | 3062 | CG3411-RC | 1230..2355 | 9..1130 | 5305 | 98.6 | Plus |
| bs-RA | 2221 | CG3411-RA | 389..1514 | 9..1130 | 5305 | 98.6 | Plus |
| bs-RB | 3792 | CG3411-RB | 1230..2064 | 9..843 | 4175 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24344090..24344675 | 9..594 | 2930 | 100 | Plus |
| 2R | 25286936 | 2R | 24348210..24348461 | 592..843 | 1260 | 100 | Plus |
| 2R | 25286936 | 2R | 24375415..24375694 | 843..1118 | 920 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:25 has no hits.
FMO01384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:42 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:03 Download gff for
FMO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bs-RA | 382..1516 | 1..1133 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:14 Download gff for
FMO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bs-RA | 382..1516 | 1..1133 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:14 Download gff for
FMO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24344083..24344674 | 1..593 | 99 | -> | Plus |
| 2R | 24348212..24348460 | 594..842 | 100 | -> | Plus |
| 2R | 24375415..24375708 | 843..1133 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:03 Download gff for
FMO01384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20235735..20235983 | 594..842 | 100 | -> | Plus |
| arm_2R | 20231606..20232197 | 1..593 | 99 | -> | Plus |
| arm_2R | 20262938..20263231 | 843..1133 | 94 | | Plus |
