FMO01385.5prime Sequence
972 bp (703 high quality bases) assembled on 2008-03-18
> FMO01385.5prime
TAAAATACCAAGTTATCAGTCGACATGACTAACCACCCCCCAGTGCGCAA
GGATTGCTATGAGAGCAGATTGCATGATATAGCCAAAACGTGTGCCATCC
TCACAAAAGCAAAAATGCGGCACGCACGCGACGTGAAAAGGAAAACACGG
AATTCTGTGAATTGGCCAAATTACTGCCGCTGCCGGCGGCGATTACTTCG
CAACTGGACAAGGCCTCCGTCATCCGGCTGACCACGTCGTATTTGAAAAT
GCGCCAAGTCTTTCCCGATGGTCTTGGCGAAGCCTGGGGCTCATCGCCTG
CCATGCAACGCGGCGCCACCATCAAGGAGCTGGGCTCCCATCTGCTGCAG
ACGCTGGACGGATTCATCTTCGTGGTGGCTCCGGATGGCAAAATCATGTA
CATCTCGGAAACGGCCTCCGTGCATTTGGGCCTCATTCATGTTGAGCTGA
CGGGCAACTCGATATTCGAGTACATACACAACTACGATCAGGACGAGATG
AATGCCATTTTGTCGCTGCATCCGCTCATCAACCAGCATCCACTCGCCCA
GACGCACACGCCCATCGGCAGTCCCAATGGCGTCCAGCATCCATCCGCCT
ACGACCACGATCGCGGATCGCACACCATCGAGATCGAGAAGACCTTCTTC
CTGCGCATGATGTGCGTCCTGGCCAAAAGGAACGCGGGCCTCACCACCTC
CGGATTTAAGGTGATACACTGCTCCGGCTAATCTGAAGGCTCACATCTTA
TCCCGATCGCGGGGATGGACAAGGCAGCCTCATCATGAATCTCGGGCTGG
TGTCCGTCGGTCACTCGCTGCCTTCATCCGCCATCAGGGAAATCTAGTCT
GCACCAAAAATGTCATGTTCCGGGCCAAGCTGGACATGAAGCTCATCTTC
TTCGATGCACGCGTATCGCAGCTAACAGGATACGAGCCGCGGACCTCTCG
AGAAAACCTGTATCATAATTCC
FMO01385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sim-RA | 2825 | CG7771-RA | 101..1044 | 25..965 | 4165 | 96.6 | Plus |
| sim-RB | 3162 | CG7771-RB | 489..1381 | 76..965 | 3970 | 96.9 | Plus |
| sim-RC | 2882 | CG7771-RC | 210..1101 | 77..965 | 3965 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13072661..13072858 | 76..272 | 865 | 97 | Plus |
| 3R | 32079331 | 3R | 13074079..13074248 | 270..439 | 835 | 99.4 | Plus |
| 3R | 32079331 | 3R | 13074837..13075006 | 543..712 | 835 | 99.4 | Plus |
| 3R | 32079331 | 3R | 13075069..13075276 | 703..911 | 655 | 92.9 | Plus |
| 3R | 32079331 | 3R | 13074571..13074672 | 441..542 | 495 | 99 | Plus |
| 3R | 32079331 | 3R | 13072499..13072550 | 25..76 | 200 | 92.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:08 has no hits.
FMO01385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:45 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:19 Download gff for
FMO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sim-RA | 101..1052 | 25..972 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:02 Download gff for
FMO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sim-RA | 101..1052 | 25..972 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:02 Download gff for
FMO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13072500..13072550 | 26..76 | 92 | -> | Plus |
| 3R | 13072662..13072856 | 77..270 | 96 | -> | Plus |
| 3R | 13074080..13074249 | 271..440 | 98 | -> | Plus |
| 3R | 13074571..13074672 | 441..542 | 99 | -> | Plus |
| 3R | 13074837..13075004 | 543..710 | 99 | -> | Plus |
| 3R | 13075077..13075276 | 711..911 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:19 Download gff for
FMO01385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8898222..8898272 | 26..76 | 92 | -> | Plus |
| arm_3R | 8898384..8898578 | 77..270 | 96 | -> | Plus |
| arm_3R | 8899802..8899971 | 271..440 | 98 | -> | Plus |
| arm_3R | 8900293..8900394 | 441..542 | 99 | -> | Plus |
| arm_3R | 8900559..8900726 | 543..710 | 99 | -> | Plus |
| arm_3R | 8900799..8900998 | 711..911 | 93 | -> | Plus |
