FMO01386.5prime Sequence
578 bp (578 high quality bases) assembled on 2008-03-18
> FMO01386.5prime
ATAAAACCACCTTATCAGTCGACATGGCACCACAGAGCAACACCAGCACC
ACATTCGTCTCCAAGACCCAGCACTATTTGAAGGTGAAGAAGCCCCTTTT
GGAGCGCCAGCGTCGGGCCCGCATGAACAAGTGTTTGGACACCTTGAAGA
CCTTGGTGGCCGAGTTCCAGGGCGATGATGCCATCCTGCGAATGGACAAG
GCCGAGATGCTGGAGGCGGCACTCGTCTTCATGCGCAAACAGGTCGTCAA
GCAGCAGGCGCCGGTCTCCCCACTTCCCATGGATAGCTTCAAGAATGGCT
ACATGAACGCCGTCAGCGAGATCTCCCGTGTGATGGCCTGCACTCCAGCC
ATGAGTGTGGATGTGGGCAAGACAGTGATGACCCATCTGGGCGTCGAGTT
CCAGCGCATGCTGCAGGCCGATCAGGTCCAGACTTCTGTTACAACCTCCA
CCCCACGCCCACTCAGCCCCGCCTCCTCGGGATACCACAGCGATAACGAG
GACTCTCAATCCGCCGCCAGCCCCAAGCCAGTCGAAGAAACCATGTGGCG
CCCTTGGAAAGCAAGCTTTCTAGACCAT
FMO01386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E(spl)m5-HLH-RA | 882 | CG6096-RA | 84..617 | 24..557 | 2655 | 99.8 | Plus |
| E(spl)m8-HLH-RA | 769 | CG8365-RA | 98..434 | 61..391 | 455 | 76.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26029119..26029652 | 557..24 | 2655 | 99.8 | Minus |
| 3R | 32079331 | 3R | 26040337..26040673 | 61..391 | 385 | 75.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:19 has no hits.
FMO01386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:58 Download gff for
FMO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6096-RA | 75..624 | 16..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:26 Download gff for
FMO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 16..563 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:07 Download gff for
FMO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E(spl)m5-HLH-RA | 75..624 | 16..563 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:07 Download gff for
FMO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26029112..26029661 | 16..563 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:26 Download gff for
FMO01386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21854834..21855383 | 16..563 | 98 | | Minus |
