FMO01387.5prime Sequence
1189 bp (987 high quality bases) assembled on 2008-03-18
> FMO01387.5prime
CAGTCGACATGGACACCGACGATGTGGAATCGAACACAAGCAGCGCGATG
TCCACACTGGGCTCGCTATTCTCCTTCACATCGCCGGCGGTGAAGAAGCT
GCTGGGCTGGAAACAGGGTGACGAAGAGGAGAAGTGGGCGGAGAAGGCCG
TCGACAGTCTGGTGAAGAAGTTGAAGAAGCGCAAGGGCGCCATCGAGGAG
CTGGAGCGTGCGCTCTCCTGTCCCGGTCAGCCCTCGAAGTGTGTCACCAT
TCCACGCTCGCTGGACGGACGATTACAGGTCTCCCATCGCAAGGGTCTGC
CGCATGTGATCTACTGCCGCGTGTGGCGCTGGCCAGATCTGCAGTCGCAC
CACGAACTGAAGCCACTCGAGCTGTGCCAGTATCCGTTCAGCGCCAAGCA
GAAGGAGGTGTGCATCAATCCGTATCACTATAAGCGCGTGGAGAGTCCGG
TGCTCCCGCCAGTACTCGTTCCTCGCCACTCGGAATTCGCGCCCGGTCAC
TCGATGCTGCAGTTCAACCATGTGGCCGAGCCCAGTATGCCGCACAATGT
GAGCTACTCGAACAGTGGATTCAACTCGCACAGCTTGAGCACCAGCAACA
CATCGGTGGGCAGTCCGAGTTCCGTCAACTCCAATCCCAATTCGCCGTAC
GACAGCTTGGCGGGAACACCGCCACCCGCCTACAGTCCCTCGGAGGATGG
CAACTCCAACAATCCGAACGACGGTGGCCAGCTGCTGGATGCTCAGATGG
GCGATGTTGCCCAGGTTAGCTATTCAGAGCCCGCCTTCTGGGCGTCGATA
GCCTACTACGAGCTAAATTGCCGCGTGGCGAGTGTTCCACTGCAACAACA
ACTCCGTGATCGTTGACGGTTTCACGAATCCTTCCAACACTCGGACCGCT
GCTGTCTCGGCCAGCTGAGCACGTGACAGGATAGCATCATCGAGACACAC
GCCGTCATATAGCAAGGTGTCATTATACTATGTGACTGCGAGTCTACGCG
ATGCTATCGACTCGTCATTTCTGCAGTCCCGCACTGCACTACCACCGATC
CATCGAGCACCGTGGCAAAACGCCGCTGCTCGCTGAAATCTTCAAATAGA
ATGGCCCACTGCTGTCCATCGTACCTGATCCAAGGCCCTTCACGACTACA
AAGTGCCGATTCGGGAGTTCGCTCCGTAAGCCTGTGGGT
FMO01387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mad-RB | 3262 | CG12399-RB | 532..1652 | 9..1095 | 4730 | 96.5 | Plus |
| Mad-RA | 2691 | CG12399-RA | 357..1477 | 9..1095 | 4730 | 96.5 | Plus |
| Smox-RB | 4521 | CG2262-RB | 1111..1193 | 288..370 | 205 | 83.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3148047..3148740 | 962..276 | 3090 | 98.7 | Minus |
| 2L | 23513712 | 2L | 3148802..3149073 | 280..9 | 1360 | 100 | Minus |
| X | 23542271 | X | 8140369..8140451 | 370..288 | 205 | 83.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:46:58 has no hits.
FMO01387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:00 Download gff for
FMO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12399-RA | 337..1354 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:58 Download gff for
FMO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mad-RA | 350..1367 | 1..1004 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:47 Download gff for
FMO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mad-RA | 350..1367 | 1..1004 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:47 Download gff for
FMO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3148047..3148737 | 279..962 | 98 | <- | Minus |
| 2L | 3148804..3149077 | 1..278 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:58 Download gff for
FMO01387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3148047..3148737 | 279..962 | 98 | <- | Minus |
| arm_2L | 3148804..3149077 | 1..278 | 98 | | Minus |
