FMO01388.5prime Sequence
770 bp (431 high quality bases) assembled on 2008-03-18
> FMO01388.5prime
TTAAATGCAAAGTTATCAGTCGACATGGAGAACCTGTCGCACTTGTATCC
ACCGCAGTTGCCAAAGGGGCGTGGTCGGCCTCGAGCGACATACGCCCAAA
CAGGCGAGTTTGATCTGGGTCTGATCCGGGAATACCGATCGCACCCAGTG
CTGTACGATAGGTCAAACAAGCGGTTCAAGGACAAGCTGTATGTGGCCCA
TATATGGGAACAGATAGCCCACAAACTGGGCTACGATGCCACCAGTATAA
GGGAACGGATGACCACGTTAAGGAATCGATATAACATCGAGAAGCGACGC
GTCGAGAATGGCCTTTCCACACAGTCTTCACAATGGCCTCTATTCGAAAG
CCTCCAGTTTCTGGGGGATCACATATGGCCCAGGCGCAGCTTTAAGAACA
TGAGCGTAAAGGAGGAGGATGAGGAGACCTACGAGGTTGACTATTGCCGG
AGCGACAGCAACGGGCATATGAACAGCATCAAGGACGAACTGGAGGACGA
CTCCGAGATCTTCGATTGCGAGCAGGCACTCCCCGTGACCACAGTGTTAG
GGATTCCCCTGAATAACTCTGACGAAGCCAACAAGAGCCAGCGCTCGACA
AATGGAGAAATGCCCAATGGCAAGGGCTACATCACTTTTGCGGAAAGCTA
TCACCGACGACACCAAAACCAGCCGGATACATCATCATAGTCCAATTGTT
AATCCCATGAGGAGCAATAAGCGTGGATCACAGCACTTTGGACGATCCTT
CGTCGAAACGCCGAGTCGAA
FMO01388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| jigr1-RG | 1607 | CG17383-RG | 394..1139 | 25..769 | 3510 | 98.4 | Plus |
| jigr1-RF | 1635 | CG17383-RF | 422..1167 | 25..769 | 3510 | 98.4 | Plus |
| jigr1-RE | 1782 | CG17383-RE | 422..1167 | 25..769 | 3510 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25649184..25649498 | 238..552 | 1530 | 99 | Plus |
| 3R | 32079331 | 3R | 25648899..25649112 | 25..238 | 1055 | 99.5 | Plus |
| 3R | 32079331 | 3R | 25649563..25649782 | 551..769 | 835 | 95 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:09 has no hits.
FMO01388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:02 Download gff for
FMO01388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17383-RE | 434..1182 | 18..768 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:16 Download gff for
FMO01388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jigr1-RE | 418..1167 | 18..770 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:31 Download gff for
FMO01388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| jigr1-RE | 418..1167 | 18..770 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:31 Download gff for
FMO01388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25648895..25649112 | 18..238 | 98 | -> | Plus |
| 3R | 25649185..25649497 | 239..551 | 99 | -> | Plus |
| 3R | 25649564..25649782 | 552..770 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:16 Download gff for
FMO01388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21474617..21474834 | 18..238 | 98 | -> | Plus |
| arm_3R | 21474907..21475219 | 239..551 | 99 | -> | Plus |
| arm_3R | 21475286..21475504 | 552..770 | 95 | | Plus |
