FMO01392.5prime Sequence
1221 bp (185 high quality bases) assembled on 2008-03-18
> FMO01392.5prime
CAGTCGACATGCCGAGCCCAACTAAACCAGCGGAGGCAGCAACAAAGGCA
ACAGCAACAAGTGACTGCAGCTGCAGCGCTGCCAGTGTTGAGCAGCGCGC
CCCCTCAAACGCGGCTAACCCCTCGTCCTCACTACCCACTAGCGGTAAAA
TTGGCGGCAAAACACAAGATCAAACGGCCGCCATTAACAAGCAAAAGGAA
TTTGCCGTGCCAAACGAAACCAGTGATTCGGGCTTCATCTCCGGCCCGCA
ATCCTCGCAGATCTTCAGCGAGGAGATAGTCCCCGATAGCGAGGAACAGG
ATAAGGATCAGCAGGATTCGGCACCCCGAAAGGAACAGCCCGTTGTCCTC
GATTCCGGTATTATCGACGAAGAAGAGGATCAGGAGGAGCAGGAGAAAGA
GGAGGAGCACCAGGACACCACCACTGCCACCGCCGATTCAATGCGACTCA
AACACAGCGCGGACACAGGCATCCCACAATGGACCGTCGAAAGCCATTTG
GTCAGTCGCGGCGAACAGCTTAACAATCTCAGCCAGAGCAGCAGCACCCA
AATCACCGGTCGCAGCAAGGTTCAATCCTCCACAGCCAGCACGGCGAACG
CGAATCCTTCGGGATCGGGAGCAACATCATCCGCTCCGCCCAGCAGCATT
AATATCATGAACGCCTGGGAGCAGTTCTATCAACAAAACGACGACGGCGA
CACACCTTTGCACCTGGCCTGTATTTCGGGATCAGTGGACGTGGAGGCCG
CCCTGATTCGCATGGCTCCTTCATCCGTGCCTGCTCACATCCAGAACGAT
GTGGCCCAGACGCCCCTTTCATCTGGCCGCTCTTTACTGCCCAGCCGAAC
ATCATGAGGATACTTTTACTCGCCGGAGCTGAGCCCACGGTGCCCGATCG
TCATGGGAAACTCAGCTCTGCTTCTTTACTGCATCGACGGAGAGAAACAT
TGTGTCCGTGCCTTGAAGAGAGTCCGCGTCGCGAAATCATGAGCCACGGA
CTATATGGAACTCGATCCACGACTAAGCGGTCATTTCCATGACTACGTCT
GCTGACGCGGATTGGAAATTCGCAACTACGATGGGAAGCTAGTGTGCATT
TGCCGTCCGAGCCGTCCAAATGTCTATGCTGAGCAATTTTGGCATTCATG
AACGATTAGCGCCCGAAGCAATCTGGGCCGCACACGCGCATGTACAATGA
CCACACGAAGGGGCTTCACAC
FMO01392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cact-RE | 1999 | CG5848-RE | 215..1318 | 9..1102 | 4605 | 95.6 | Plus |
| cact-RD | 2178 | CG5848-RD | 394..1497 | 9..1102 | 4605 | 95.6 | Plus |
| cact-RC | 2356 | CG5848-RC | 160..1263 | 9..1102 | 4605 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16324333..16325027 | 703..9 | 3385 | 99.1 | Minus |
| 2L | 23513712 | 2L | 16323340..16323517 | 883..704 | 675 | 96.7 | Minus |
| 2L | 23513712 | 2L | 16323089..16323172 | 966..882 | 270 | 90.6 | Minus |
Blast to na_te.dros performed 2014-11-28 20:27:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6770 | 19..77 | 130 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6845 | 19..77 | 121 | 69.5 | Plus |
FMO01392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:08 Download gff for
FMO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5848-RA | 102..1079 | 1..982 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:59 Download gff for
FMO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cact-RC | 153..1130 | 1..982 | 97 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:56 Download gff for
FMO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cact-RC | 153..1130 | 1..982 | 97 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:56 Download gff for
FMO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16323340..16323517 | 704..883 | 96 | <- | Minus |
| 2L | 16324333..16325034 | 1..703 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:59 Download gff for
FMO01392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16323340..16323517 | 704..883 | 96 | <- | Minus |
| arm_2L | 16324333..16325034 | 1..703 | 98 | | Minus |
