FMO01393.5prime Sequence
1180 bp (1003 high quality bases) assembled on 2008-03-18
> FMO01393.5prime
CAGTCGACATGTTGAGACACTGCCTCGCCAACGTCGACTACGTCCGCCTG
CACGCCCAGCAGCAGTTGCGTCCCAAATGCGGCGAGATCTTCTACGAACC
GGAGGCGAATAGATTCCAACTGGTCTGCCTGCTCTGCGACATGAAGCACT
TTGGATTCGAGGACTTCGCCCGCCATATCCGTAATGTGCACTTCGACAAG
CAGGGCCGACCGCTCACCAAGACGGTCACGGGACTGGGCAGACTAGCACG
AGAGGAACAGGAGTTCCAAGGGGTCAGCGCAGAACCATTGGCTGTGGACA
GCTTCAAGAAAGAGTACCTGCCCAACGAGGATGTTCTGTCGGAGGAGGAG
GACGCGGAACAGGAGCTGGGACTGGAACAGGACGAGGGCAATCCACTACG
CATCATGGTGCTCGGGGGTAAACAGTCCGTGGACGAGGAGACCATCGATA
CGATGTGGCAGCCGGATCATGACAGTTCCTCCGCATCCGTCAACGAGGGG
TGCGCTCTGGAGGCTCTGTTGGGCGTGGAAAATCCGCAAGACTATCAACC
GGATGAGGACGGGGAGGAGCACCAGTCTGTTTTTAAGAAGCAGCGCCAAC
CAAAGGACTACAACTGCCCACACTGCGACAGGAGGTACACGACGCAGAAA
TACCTAAACACCCACCTAAAGATGAGCCATCCGTTTCCGCAGGCCTTCAA
GTGCGTCGACTGCAAAGCCACCTTCGATGTGGACCGAGCATTGGCCCAGC
ATCGTCGCAAGGAGCACACGGAGTTCGCCTGCCAGCTATGCGACAAGGTG
TTCAAAAGCTCGCGATCCCTTCTTCGCCATGTGCAGGGTCACTCCGGCGC
CAGGACATTCAAGTGTGAGCACGAGACTGCGGCAAGTCGTTTGTCAACCA
GCACAACCTCACCTCGCATCGGCGGGTCCCAGCGAGGAGCGACTACGTGT
GCGAGCTGTGCGCTATAGATCCGCTACGGGAGGCGTGATCGTCCACGGCG
CACGCATACGGCGGGAATCCTCAGTGCGAACTGGTGCTGTCGCTTGCTCA
GTCGCTGCTCACGAGCCAGCCATGCATCACGAAAGCTACAAGTGCACAAT
TGATCGCCTCTCCGCCGAGCCTATACCAGACTTGCATTGCACAGACTCAG
GTGCTGATCTCGCGTATGTCCTGAGGTCCG
FMO01393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10959-RA | 1836 | CG10959-RA | 116..1127 | 9..1011 | 4845 | 99.1 | Plus |
| CG10959-RB | 1830 | CG10959-RB | 116..1121 | 9..1011 | 4745 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8148898..8149476 | 9..587 | 2895 | 100 | Plus |
| X | 23542271 | X | 8149543..8149977 | 586..1011 | 1760 | 97.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:23:43 has no hits.
FMO01393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:46:10 Download gff for
FMO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 23..1120 | 1..1077 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:50 Download gff for
FMO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 110..1207 | 1..1077 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:14 Download gff for
FMO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10959-RA | 110..1207 | 1..1077 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:14 Download gff for
FMO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8148892..8149476 | 1..587 | 99 | -> | Plus |
| X | 8149545..8150057 | 588..1077 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:50 Download gff for
FMO01393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8042925..8043509 | 1..587 | 99 | -> | Plus |
| arm_X | 8043578..8044090 | 588..1077 | 94 | | Plus |
