FMO01395.5prime Sequence
1196 bp (1000 high quality bases) assembled on 2008-03-18
> FMO01395.5prime
CAGTCGACATGTTTTCTGTCCTTCATAAAGAGGAAAATGCGCACGACAGT
CAGCTATGGGCGTGCACCTGGGGACGCGACACTGCGGCCTCAGATCCGGA
TGACGCGGTCGTGGAGCCCGAGGAGAATCCCTTTGATTTCGATAAGAAGG
AGGCCCGCCCGAAGGATTTCTTGGTCACCGGCGGACTGGATGACTTGGTA
AAGGTGTGGGACTTGCAGGAGGACAACACCCTAAAGTTGCGCCACAAACT
AAAAGGACATGCCCTGGGAGTTGTTTCTGTGGCCGTCAGTTCCGATGGAC
AGACCATTGCCAGTAGTTCTCTGGACTCCACCATGTGTTTGTGGGATGCC
CGTTCGGGCGACAAGAAACACCTACTTAGCTTTGGGCCTGTTGATCTCTG
GACGGTGCAATTTTCACCCTGCAACAAATATGTGATATCCGGACTGAACG
ACGGCAAAATCTCCATGTACAGTGTGGAAACCGGAAAGGCAGAGCAGACA
TTGGATGCCCAAAATGGGAAATACACGCTTAGCATTGCCTACAGTCCCGA
TGGCAAGTACATTGCCAGTGGAGCCATCGATGGTATCATTACCATTTTCG
ATGTGGCCGCGGGCAAGGTAGTGCAAACATTGGAAGGACACGCGATGCCA
GTGCGTAGCCTTTGCTTTTCTCCGAACTCGCAGCTGCTGCTCACTGCCTC
AGATGATGGTCACATGAAGCTTTATGATGTAACCCACTCCGACGTTGTGG
GCACCCTATCTGGGCACGCATTTTGGGTGCTGTGCGTGGCATTCTCCGAG
GACGGCAAACACTTTGCCAGCTCCTCCAGTGATAACAGCGTGAAAATATG
GGACACCTCGGAACGCAAGTGCCTGCACACGTTCGCCGAGCACACAGATC
AGTGTGGGGCGTCCGATATAGCCCGGAAACGACAGGTGCCTCTGCTTCTG
AGGACAGTCCCTGAACATATACTACTGTCCGCCCAATGCCATGTGCAGCT
TTCTTAGACCATTCGTTGGCCGCGGCGGGCCCAGGTTAGTTGTCATAATT
CATATTCAAATCCTAAATCCTAATCACACTAGCTAGGAGATTCTTGGTCA
TGACTAGTGCCTGATCTCTCACAATAGAGTCGGGCGTAACCTGACTTCCG
AACATTCGAATTGGAGCTTCTGAGAGGGCCTATTATCGTGACATCA
FMO01395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3909-RA | 1102 | CG3909-RA | 78..1066 | 9..992 | 4805 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10043402..10043694 | 11..303 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 10043766..10044004 | 304..542 | 1195 | 100 | Plus |
| 3R | 32079331 | 3R | 10044304..10044570 | 731..992 | 1075 | 97 | Plus |
| 3R | 32079331 | 3R | 10044058..10044249 | 539..730 | 945 | 99.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:45:03 has no hits.
FMO01395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:45:54 Download gff for
FMO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3909-RA | 90..1080 | 9..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:36 Download gff for
FMO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3909-RA | 78..1068 | 9..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:19 Download gff for
FMO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3909-RA | 78..1068 | 9..995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:19 Download gff for
FMO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10043397..10043694 | 5..303 | 98 | -> | Plus |
| 3R | 10043766..10044004 | 304..542 | 100 | -> | Plus |
| 3R | 10044062..10044249 | 543..730 | 100 | -> | Plus |
| 3R | 10044304..10044570 | 731..992 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:36 Download gff for
FMO01395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5869119..5869416 | 5..303 | 98 | -> | Plus |
| arm_3R | 5869488..5869726 | 304..542 | 100 | -> | Plus |
| arm_3R | 5869784..5869971 | 543..730 | 100 | -> | Plus |
| arm_3R | 5870026..5870292 | 731..992 | 97 | == | Plus |
