FMO01401.5prime Sequence
662 bp (662 high quality bases) assembled on 2008-03-18
> FMO01401.5prime
CAGTCGACATGAATATCTTTCGCTTTGCTGGGGATCTGTCGCATGTGTTT
GCCATCATAATACTGCTGCTGAAGATATGGAAGACCCGCTCGTGCGCCGG
AATATCGGGCAAGTCGCAGATCCTGTTCGCCGTGGTCTATCTGACGCGCT
ACCTGGATCTGTTCACCACCTACGTGAGCCTGTACAACTCGGTGATGAAG
GTGTTGTTCCTGGCCACGTCCGGTGCCACCGTGTATTTGATGTACGTGAA
GTTTAAGGCCACCTATGACCACAATCACGATTCGTTCCGCATCGAATTCC
TGCTGGTGCCGTGCGCCCTGCTCTCGCTGGTGATCAATCATGAGTTTACC
GTGATGGAAGTGCTGTGGACATTCTCGATCTATTTGGAATCGGTGGCCAT
TCTGCCGCAGCTGTTCCTAGTGAGCAGAACCGGCGAGGCCGAGTCCATCA
CCAGCCACTACCTCTTCGCCCTGGGATCGTACCGTGCACTCTACTTGCTC
AACTGGGTCTACCGGTACATGGTCGAGTCGCACTACGACCTTATCGCGAT
CTTCGCCGGAGTTGTCCAGACCGTCTTGTACTGCGACTTCTTCTACTTAT
ACATTACCAAAGTTCTTAAGGGCAAGAAGCTCCAGCTGCCGGCAGCAAGC
TTTCTAGACCAT
FMO01401.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| KdelR-RC | 1679 | CG5183-RC | 218..853 | 9..644 | 3180 | 100 | Plus |
| KdelR-RB | 1273 | CG5183-RB | 285..920 | 9..644 | 3180 | 100 | Plus |
| KdelR-RA | 1201 | CG5183-RA | 213..848 | 9..644 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10427171..10427806 | 9..644 | 3180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:32 has no hits.
FMO01401.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:03 Download gff for
FMO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5183-RA | 224..873 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:27 Download gff for
FMO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KdelR-RB | 276..925 | 1..650 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:44 Download gff for
FMO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| KdelR-RA | 204..853 | 1..650 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:44 Download gff for
FMO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10427162..10427811 | 1..650 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:27 Download gff for
FMO01401.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10427162..10427811 | 1..650 | 99 | | Plus |
