FMO01403.5prime Sequence
1207 bp (983 high quality bases) assembled on 2008-03-18
> FMO01403.5prime
CAGTCGACATGGCCGGAGCAACACTTTTCGAGCGTGCCCAGGCATTGTCC
AGCGTGAATCGCGAGGAGCAGGATAGTTCGCTGCTGAACAAACTGGTCCG
CGACCAGGAGGGCGCCGAGAACGATGAGGAGCGCATCCGAATCAAGGAGC
AGGGCATTCTGCAGCAGGGCGAGCTCTACAAGCAGGAGGGCAAGGCCAAG
GAGCTGGCCGATCTCATCAAGGTGACGCGTCCGTTCCTCAGCTCGATCAG
CAAGGCCAAGGCGGCCAAGCTGGTGCGTTCGCTGGTGGACATGTTCCTGG
ACATGGACGCGGGCACAGGCATTGAGGTTCAATTGTGTAAAGACTGCATT
GAGTGGGCCAAACAGGAGAAGCGCACATTTCTTCGCCAATCGCTGGAAGC
TCGTCTGATTGCCTTATATTTTGATACTGCTTTGTACACGGAGGCCTTGG
CTCTGGGTGCCCAATTGCTGCGCGAGCTGAAAAAGCTGGATGACAAGAAT
CTGCTGGTGGAAGTGCAGCTGCTGGAGAGCAAAACCTATCACGCACTGAG
CAACCTGCCCAAGGCTAGGGCCGCCCTCACCTCAGCCCGCACCACGGCCA
ATGCTATCTACTGTCCGCCAAAGGTGCAAGGCGCACTGGATCTTCAGTCC
GGCATCCTACATGCGGCTGATGAGCGTGACTTTAAGACCGCATTCTCCTA
TTTCTACGAGGCCTTTGAAGGATTCGACAGCGTGGACAGCGTCAAGGCCT
TGACCTCGCTTAAATACATGTTGCTGTGCAAAATCATGTTGGGACAGTCC
GATGATGTCAACCAGCTCGTCAGTGGAAAGCTGGCTATTACCTATTCGGG
CCGCGATATAGATGCTATGAAATCAGTGGCTGAGGCTTCACACAACCGTT
CCCTGGCCCGACTTCCAGGCTGCCTCAAGGAATACAAAAAGGAGCTCGCC
GAGGATTGTGATTGTGCAGCGCATTTGGGCACGTTATACGACACCATGTT
GGAGCAACTTGTGCGCATCATGAACCCTACTCTCGTGTTGCAGTCGCAAT
GTGCGAAGAGCATTCAGCTGCCATGCCGCAGTGCAAAGAGCTGTCAATGA
TCCTGGACCAAGTCACCGCATTCTGAATCAGGTGAGATTCTGAATGTTTC
CAGACGCTCGTGACAAGACCTATGTAACGCGTGCTCTGTAAACCTCTCAT
AGGTTAT
FMO01403.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpn6-RC | 1662 | CG10149-RC | 74..1275 | 9..1185 | 5105 | 96.3 | Plus |
| Rpn6-RB | 1827 | CG10149-RB | 239..1440 | 9..1185 | 5105 | 96.3 | Plus |
| Rpn6-RA | 1612 | CG10149-RA | 126..1327 | 9..1185 | 5105 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14751144..14751653 | 834..325 | 2550 | 100 | Minus |
| 2R | 25286936 | 2R | 14751714..14752033 | 328..9 | 1600 | 100 | Minus |
| 2R | 25286936 | 2R | 14750787..14750996 | 1038..833 | 680 | 95.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:28:07 has no hits.
FMO01403.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:24:56 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:13 Download gff for
FMO01403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 117..1240 | 1..1111 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:17 Download gff for
FMO01403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpn6-RA | 117..1240 | 1..1111 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:17 Download gff for
FMO01403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14751716..14752039 | 1..326 | 98 | | Minus |
| 2R | 14750783..14750995 | 834..1042 | 94 | <- | Minus |
| 2R | 14751145..14751651 | 327..833 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:13 Download gff for
FMO01403.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10638288..10638500 | 834..1042 | 94 | <- | Minus |
| arm_2R | 10638650..10639156 | 327..833 | 100 | <- | Minus |
| arm_2R | 10639221..10639544 | 1..326 | 98 | | Minus |
