FMO01405.5prime Sequence
1202 bp (1038 high quality bases) assembled on 2008-03-18
> FMO01405.5prime
CAGTCGACATGATTATTACAATTAAAAATCTTCAACAGCAAACTTTTACT
ATTGAGTTTGCCCCGGAAAAAACGGTTTTGGAACTGAAGAAGAAAATATT
CGAGGAGCGCGGTCCAGAGTACGTCGCCGAAAAACAAAAACTGATCTACG
CTGGCGTCATATTGACGGATGACCGCACCGTTGGTTCATACAACGTTGAT
GAAAAAAAGTTCATTGTGGTAATGTTGACACGCGATTCGTCTAGTTCAAA
TCGTAATCAACTTAGTGTAAAAGAAAGTAATAAATTGACTAGCACCGACG
ATTCAAAGCAATCTATGCCTTGCGAAGAAGCCAACCATACCAATTCGCCT
AGTTCCACAAATACAGAAGATTCAGTTTTATCACGTGAAACCAGACCTTT
ATCTAGTGACGAATTGATTGGCGAGTTGGCCCAGGCTTCCTTACAATCGC
GCGCTGAATCTAATTTGCTTATGGGTGACGAATACAACCAAACAGTCCTA
TCAATGGTGGAAATGGGTTACCCAAGAGAGCAGGTTGAACGTGCGATGGC
TGCTAGTTATAACAACCCGGAAAGAGCCGTTGAATATCTCATTAATGGCA
TACCTGCAGAGGAAGGTACTTTTTACAATAGGCTGAATGAATCAACGAAT
CCTAGTCTAATCCCCTCCGGACCGCAACCTGCGTCGGCAACCTCTGCCGA
GCGTTCAACAGAATCAAATTCAGACCCCTTTGAATTTTTACGTAGCCAGC
CACAGTTTCTTCAAATGCGATCTTTAATTTATCAAAACCCTCATCTTTTG
CATGCAGTATTGCAGCAGATTGGTCAGACAAACCCAGCTCTTTTACACTT
ATTTCGGAGAACCAAGATGCGTTTCTCAATATGCTTAATCAACCGATTGA
CCGCGAATCGGGAGTCAGGCGCCACCGTTCCTCCCGTTTCGAATGCGCGG
ATTCTTCACTTTGGGACATGTGACTCTTTTCTCAGATTAGAGTAGCTACT
TCAGCACAAGATCAGCGCGGGTACAGTGCAGCACATCAAGCGGTAGCGCA
GCGGATAACGAGACTGAACACTTAGGAGTATCACATCGTAATCGCAAGAT
AAGACGCATAACGCTAAGCTTTGATCGAAAGCCTTGACTGAACACTGCTG
GAGACGAGTACAGCGCCATTTTGGTGCTCTATCGCGCGCCTGACATCCTA
GA
FMO01405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:39:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rad23-RC | 2009 | CG1836-RC | 132..1223 | 9..1083 | 4950 | 98 | Plus |
| Rad23-RA | 1489 | CG1836-RA | 132..1223 | 9..1083 | 4950 | 98 | Plus |
| Rad23-RB | 1507 | CG1836-RB | 132..1241 | 9..1083 | 4760 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:39:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 308426..309079 | 70..723 | 3255 | 99.8 | Plus |
| 4 | 1348131 | 4 | 309692..309947 | 817..1061 | 590 | 91.1 | Plus |
| 4 | 1348131 | 4 | 309534..309633 | 719..818 | 500 | 100 | Plus |
| 4 | 1348131 | 4 | 308224..308291 | 9..76 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:39:10 has no hits.
FMO01405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:09 Download gff for
FMO01405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1836-RA | 112..1209 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:25 Download gff for
FMO01405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad23-RA | 126..1223 | 1..1083 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:58 Download gff for
FMO01405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rad23-RA | 126..1223 | 1..1083 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:58 Download gff for
FMO01405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 308218..308289 | 1..74 | 94 | -> | Plus |
| 4 | 308431..309079 | 75..723 | 100 | -> | Plus |
| 4 | 309539..309633 | 724..818 | 100 | -> | Plus |
| 4 | 309694..309975 | 819..1083 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:25 Download gff for
FMO01405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 328844..328915 | 1..74 | 94 | -> | Plus |
| arm_4 | 329057..329705 | 75..723 | 100 | -> | Plus |
| arm_4 | 330165..330259 | 724..818 | 100 | -> | Plus |
| arm_4 | 330320..330601 | 819..1083 | 92 | | Plus |
