FMO01407.5prime Sequence
440 bp (440 high quality bases) assembled on 2008-03-18
> FMO01407.5prime
CAGTCGACATGTCGACGATTGTGAGGAAACTTATCAGCACTGCAAATGCT
GCCAAGCCAGTGGCTCCCTACAACCAGGCTGTGGTGGCCGATCGTACTGT
GTATGTGTCCGGATGTCTGGGTCTGGACAAGGACACCATGAAACTGGTTC
CTGGAGGACCCACTGAACAAGCGCAGAAGGCATTGGAGAATCTGGAGGCT
GTTCTAAAGGCGGCCGATTCCGGAGTGGACAAAGTCATCAAGAACACAGT
GTTCTTGAAGGATCTCAACGATTTCGGGGCAGTCAATGAGGTCTACAAGC
GGGTGTTCAATAAGGATTTCCCGGCCCGCAGCTGTTTCCAGGTGGCCAAG
CTGCCCATGGATGCTCTGGTGGAGATCGAGTGCATTGCCTTGACCGGATC
TGTGGAGACGAAAACCGTGCAAGCAAGCTTTCTAGACCAT
FMO01407.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| UK114-RB | 610 | CG15261-RB | 106..519 | 9..422 | 2070 | 100 | Plus |
| UK114-RA | 553 | CG15261-RA | 106..519 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15274620..15274849 | 303..74 | 1150 | 100 | Minus |
| 2L | 23513712 | 2L | 15274272..15274391 | 422..303 | 600 | 100 | Minus |
| 2L | 23513712 | 2L | 15274922..15274986 | 73..9 | 325 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:58:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 4064..4091 | 292..265 | 104 | 85.7 | Minus |
FMO01407.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:13 Download gff for
FMO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15261-RA | 33..464 | 1..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:08 Download gff for
FMO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UK114-RA | 96..527 | 1..429 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:36 Download gff for
FMO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| UK114-RA | 96..527 | 1..429 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:36 Download gff for
FMO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15274264..15274390 | 304..429 | 97 | <- | Minus |
| 2L | 15274620..15274849 | 74..303 | 100 | <- | Minus |
| 2L | 15274922..15274992 | 1..73 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:08 Download gff for
FMO01407.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15274264..15274390 | 304..429 | 97 | <- | Minus |
| arm_2L | 15274620..15274849 | 74..303 | 100 | <- | Minus |
| arm_2L | 15274922..15274992 | 1..73 | 94 | | Minus |
