FMO01410.5prime Sequence
422 bp (422 high quality bases) assembled on 2008-03-18
> FMO01410.5prime
CAGTCGACATGTCTGTGTGGACCACGGCCAACAATTCGGGCCTAGAGACG
CCAACAAAGTCGCCGATCACGTCGTCGGTTCCGCGGGCAGCGAGAAGTTC
TGCAGTGATCACCACTGGAAATCACCAGCAGCACCACTTCCAGCACGTTG
TGGCCGCCGCCGTTGCAGCCGCCACTTCAGTGGCCACCGGTCATCAGTTC
CAGCAACAGTTCCCGCTGCACGCACATCCGCATCCACAGCACCACAGCAA
CAGTCCCACGGGTAGCGGCAGCAACAGCAACAACAGCGCAGGTTTCCAGC
GCACCAGCATCAGCAACTCGCTGCTGCAGTTCCCGCCGCCCCCGCCCCCT
TCCTCACAGAACCAGGCGAAGGCAGGCCGCACCGTTCAAATTGATTGTCG
AATTGCAAGCTTTCTAGACCAT
FMO01410.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| olf186-F-RG | 4582 | CG11430-RG | 236..632 | 8..404 | 1985 | 100 | Plus |
| olf186-F-RF | 2407 | CG11430-RF | 563..926 | 8..371 | 1820 | 100 | Plus |
| olf186-F-RA | 2080 | CG11430-RA | 236..599 | 8..371 | 1820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17851097..17851461 | 8..372 | 1825 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:17:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6730..6958 | 119..350 | 253 | 60.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6952 | 87..313 | 247 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6887 | 166..317 | 205 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6862 | 192..319 | 203 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6838 | 204..329 | 199 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2505 | 121..317 | 189 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6819 | 224..328 | 183 | 71.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2427 | 192..317 | 179 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2417 | 213..329 | 176 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 201..317 | 164 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2747..2857 | 203..318 | 162 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2460 | 192..317 | 154 | 62.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2382 | 242..317 | 145 | 70.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6788 | 264..317 | 143 | 80.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1155 | 193..288 | 140 | 61.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1052..1148 | 226..317 | 137 | 67 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1054..1154 | 213..317 | 137 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2588..2643 | 262..317 | 118 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2668 | 86..318 | 117 | 55.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1062..1115 | 264..317 | 116 | 75 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1575 | 231..287 | 107 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2835 | 245..317 | 106 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2593..2649 | 261..317 | 105 | 64.9 | Plus |
FMO01410.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:59 Download gff for
FMO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11430-RC | 219..619 | 8..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:24 Download gff for
FMO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RG | 236..636 | 8..408 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:42 Download gff for
FMO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| olf186-F-RG | 236..636 | 8..408 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:42 Download gff for
FMO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17851097..17851460 | 8..371 | 100 | -> | Plus |
| 2R | 17855140..17855176 | 372..408 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:24 Download gff for
FMO01410.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13738602..13738965 | 8..371 | 100 | -> | Plus |
| arm_2R | 13742645..13742681 | 372..408 | 94 | | Plus |
