FMO01414.5prime Sequence
506 bp (506 high quality bases) assembled on 2008-03-18
> FMO01414.5prime
CAGTCGACATGTCGCATTCAGTGACCATTACCCGCACCACCACCAGCACC
ACCAACACCTCCTACATTGTCCTGAACACGGGCTATCTGAAGACTTTCCC
CGGCATCCTCAAGCTCTTCGAGCTGATCATTGGTGCTTCCATTGTGGGAA
TTCTGGCGTTCAACTACCAGGACTACCACAGATACTTCTATGGCCAGCAG
GATCTGTTCCATTATCTGATGGCCGTTACCTTTATGATAGGAACGTTCTG
TTTACTCCTCGCCTGCCTCACGTCGCTCAGCACGGGCGGCATTATTGCCA
AGACGATCTATGAGCTGATTTACCACAGTGTGGCCGCCATCCTGATCCTG
GTCTCGTCCACCATCCTGCTGCTCAAGCTGCGCGATGTAAAGCACGACGC
CTATATGGCAGCCGGTGTTTTGGGCCTGGTCAATGCGGTGCTGTACTTCA
TCAGCGCCTTCCTGGCCCACCGATCCTATCGCGGCATTGCAAGCTTTCTA
GACCAT
FMO01414.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1572-RD | 889 | CG1572-RD | 76..555 | 9..488 | 2400 | 100 | Plus |
| CG1572-RC | 1245 | CG1572-RC | 197..676 | 9..488 | 2400 | 100 | Plus |
| CG1572-RB | 974 | CG1572-RB | 161..640 | 9..488 | 2400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11555925..11556112 | 312..125 | 940 | 100 | Minus |
| X | 23542271 | X | 11555619..11555795 | 488..312 | 885 | 100 | Minus |
| X | 23542271 | X | 11556184..11556300 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dnet\R1B | 2038 | Dnet\R1B NETR1B 2038bp | 72..126 | 323..377 | 104 | 65.5 | Plus |
FMO01414.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:23 Download gff for
FMO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RB | 118..616 | 1..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:56 Download gff for
FMO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RB | 151..649 | 1..500 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:25 Download gff for
FMO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1572-RB | 151..649 | 1..500 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:25 Download gff for
FMO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11555610..11555795 | 312..500 | 97 | <- | Minus |
| X | 11555926..11556111 | 126..311 | 100 | <- | Minus |
| X | 11556184..11556307 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:56 Download gff for
FMO01414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11449643..11449828 | 312..500 | 97 | <- | Minus |
| arm_X | 11449959..11450144 | 126..311 | 100 | <- | Minus |
| arm_X | 11450217..11450340 | 1..125 | 96 | | Minus |
