FMO01415.5prime Sequence
389 bp (389 high quality bases) assembled on 2008-03-18
> FMO01415.5prime
CAGTCGACATGAAGTTCCAATACAAGGAGGAGCACGCCTTCGAGAAGCGT
CGCGCCGAGGGCGACAAGATCCGTCGCAAATATCCAGACCGTGTGCCCGT
CATCGTCGAGAAGGCTCCCAAGGCGCGCATCGGTGATTTGGACAAGAAGA
AGTACCTGGTGCCTTCCGACCTGACCGTCGGTCAGTTCTACTTCCTCATT
CGCAAGCGCATCCACCTGCGTCCCGAGGATGCCCTCTTCTTCTTTGTGAA
CAACGTCATTCCACCAACATCGGCTACCATGGGCTCCCTGTACCAGGAAC
ATCACGAGGAGGACTATTTCCTGTACATTGCCTACTCCGATGAGAATGTT
TACGGCATGGCCAAAATTAACGCAAGCTTTCTAGACCAT
FMO01415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg8a-RA | 1214 | CG32672-RA | 268..631 | 8..371 | 1820 | 100 | Plus |
| Atg8a-RC | 1183 | CG32672-RC | 328..600 | 99..371 | 1365 | 100 | Plus |
| Atg8a-RB | 1010 | CG32672-RB | 155..427 | 99..371 | 1365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10765604..10765802 | 297..99 | 995 | 100 | Minus |
| 3R | 32079331 | 3R | 17724567..17724904 | 346..9 | 775 | 82 | Minus |
| X | 23542271 | X | 10767979..10768071 | 100..8 | 465 | 100 | Minus |
| X | 23542271 | X | 10765461..10765537 | 371..295 | 385 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 412 | 7567 | 412 412 7567bp | 5841..5904 | 7..69 | 110 | 69.7 | Plus |
FMO01415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:26 Download gff for
FMO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32672-RA | 256..635 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:57 Download gff for
FMO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 256..635 | 1..380 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:30 Download gff for
FMO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg8a-RA | 259..638 | 1..380 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:30 Download gff for
FMO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10765454..10765535 | 297..380 | 96 | <- | Minus |
| X | 10765605..10765802 | 99..296 | 100 | <- | Minus |
| X | 10767981..10768075 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:57 Download gff for
FMO01415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10659487..10659568 | 297..380 | 96 | <- | Minus |
| arm_X | 10659638..10659835 | 99..296 | 100 | <- | Minus |
| arm_X | 10662014..10662108 | 1..98 | 95 | | Minus |
