FMO01417.5prime Sequence
827 bp (827 high quality bases) assembled on 2008-03-18
> FMO01417.5prime
CAGTCGACATGAAGACTGTGCCGAAAAAGAAGGAAACGGCCCTGCGCTTG
CGGGAGTCGCGCCGTGAGGAGCAGAAACCAGAGACGACAAACCTGCCGCC
GGACGACGACGCAGAGTCGGATTTGCCCATTCGGGGCCGTCCCTCGAAGA
AGCTGCTCATCCAGCAGCAACAGCAGCGTCAGTACCAGGTAAAGCTAGAT
CCGAAAGTCAAGACGGTCACGTCGGGCTCTAGCGAGAAGCCTTCGACATC
CTCGAGTGCAGCCGCAGCCGGCGCCGGAGGACGCATCAAGGCCAGGAGAG
TGCTCTACAAGAAGAGCGTTGGAGCAGCGGCAGTCGCCCAGAAGGCGCCC
GGCGAGACCTACGTAATGCGCCTGTTTGAGCGAAGTTTGGACCTGTCCAA
ATACCAGGATAAGACTCCTTTGTACCCCATATGCCGCGCATGGATGGCAA
ATCAACCCAAGAATCCAGCTGTGGGTGCATTTCAAACAGATGCTTCACTC
ACGGCCACCAAACGTGAGGACAACGGCGAAGAAATCCTGTCCCAAATTAA
AAGCGGCGAGATAAAGGTGATCAACCAGCTCCCGCAGGCCAAGTCCACGG
ATCTGCCCATAATTCCGCCTCGTCTGGAGTTCAGCCAGGAGGACAAGAAG
CGGGAAAAGGCTCTCCAAGGTGCCAGTACCTCCGATCTTCTGTCCTCCAA
TATGAACCGCTGGAAGAAAGTGCGCGGACACTGGATAAAGCATATCAAGA
AGTATGAAAAGGAGCGATATGAAGTTATTGACAAGATTATGAGCTTGGTC
TGCAAAAACGCAAGCTTTCTAGACCAT
FMO01417.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:11:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mip40-RA | 1092 | CG15119-RA | 100..900 | 9..809 | 4005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:11:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19291297..19292097 | 809..9 | 4005 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2397 | 151..201 | 120 | 70.6 | Plus |
FMO01417.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:30 Download gff for
FMO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15119-RA | 101..921 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:36 Download gff for
FMO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 94..914 | 1..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:04 Download gff for
FMO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mip40-RA | 94..914 | 1..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:04 Download gff for
FMO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19291283..19292103 | 1..822 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:36 Download gff for
FMO01417.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15178788..15179608 | 1..822 | 99 | | Minus |
