FMO01418.5prime Sequence
617 bp (617 high quality bases) assembled on 2008-03-18
> FMO01418.5prime
CAGTCGACATGTCGCAGTTCGACACGCGACTTATTGAGCTGGTTAGGGCT
AATCCCAAGCTTTATGAGCGCGAACTTAGAAACGCACCCTACGAAGCGCA
TAAGAAGCGACATCCGGAAATCTGGAGCAGCATCGCCACTTCATTAAATT
CAGAAGCTAGTGCCTGTGTCAGTCGTTGGAATCATCTGGTGGCCAAACAG
CGTCGGGAGCTGGCCAAAGAAAAGGCCGGAGGCACTGGCTCCGATTGGAG
TCTTCTGCCGCATTTGAAATTCCTGCAGCATCACCACCATCCGATTAATC
ACCGAAATTCGGGTGATCTGAGTAGGAGCACACTGAAATCCAGCGACGAG
GTCAACGATGATGAGGATCCGCTCCAGGAGGCCATGGATGAGCAGCTGGC
CGTTGCGGGAGCTGCACCAGCACCACCCACAAATCCTGCCCATGCAACGC
CAGTGGCTCAAGCAGAAAAGAGGATAGAAGCCCTGCTTGAAGGACTGGGC
GAAGCAAACCGAATTAAGGCGGAGAAACGCATTCTGGCCTACCTATGCAA
ATGCAATCTGCGCGCCCTGAACGACGAGCAAATCGATGATATAGTTATTG
CAAGCTTTCTAGACCAT
FMO01418.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6683-RA | 990 | CG6683-RA | 75..665 | 9..599 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8514199..8514643 | 599..155 | 2225 | 100 | Minus |
| 3L | 28110227 | 3L | 8514700..8514847 | 156..9 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:07 has no hits.
FMO01418.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:32 Download gff for
FMO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 38..645 | 1..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:35 Download gff for
FMO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 68..675 | 1..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:35 Download gff for
FMO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6683-RA | 68..675 | 1..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:35 Download gff for
FMO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8514189..8514641 | 157..607 | 99 | <- | Minus |
| 3L | 8514700..8514853 | 1..156 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:35 Download gff for
FMO01418.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8507289..8507741 | 157..607 | 99 | <- | Minus |
| arm_3L | 8507800..8507953 | 1..156 | 97 | | Minus |
