FMO01421.5prime Sequence
897 bp (897 high quality bases) assembled on 2008-03-18
> FMO01421.5prime
CAGTCGACATGTTCCAGGGCTGCTACGGCGGAACCCAGAAGCACGAGCCC
GACCTGCACATCGTCTTGGAGCGCGCGTGGCAACAGGGACTGCAGAAAGT
CATCGTTACCGCCGGCTGCCTGAAGGATGTGGATGAGGCACTGGAACTGG
CCTCCAAGGATGAGCGCATCTACACGACAGTGGGAACACATCCCACCCGG
TGCGAGGAATTCGTACCAGACCCAGAGGGCTACTATGACCAGTTGCGATC
CAGGATCAAGGCAAATCGAACCAAGGTGCGGGCCGTAGGAGAATGTGGTC
TAGACTACGATCGCTTGCACTTCTGCGCCCAGGAAACCCAGCGTCTGTAC
TTCGAGAAGCAGCTGGACCTAGCGGCCGAGTTCAAACTGCCTCTCTTTCT
GCACATGAGAAATGCTGCCGAGGACTTCATGGGCATCCTGGAAAGAAATC
GGAACAAGATCGAGGAGTGCGGCGGCGGAGTGGTGCACAGCTTTACAGGA
ACTTTGGAGGAGGCCCAGCGCATCCTCGCCTTCGGCGGTCTCTACATAGG
CTTCAATGGGTGCTCCCTAAAGACGGATGAAAACGCAGAAGTGGTGCGCA
AGCTACCCAACGACAGGATAATGCTAGAAACCGACTGCCCGTGGTGTGGT
ATTCGACCCTCGCATGCTGGACACAAGCACGTGACCACCAAGTTTCCCAC
CGTCAAGAAGAAAGAGAAATGGACAGCTGAATCCCTAATAGACGGACGCT
GTGAGCCTTGCCAAATCAGCCAAGTTTTGGAGTCTATTGCCGGAATCAAA
CAAGAGCCTAAAGAACAGCTGGCTGCGTTATACTACCAAAACACATTGGA
CTTGTTCTTCGGCACAGGAGAGAGTAAGAGCAAGCTTTCTAGACCAT
FMO01421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3358-RG | 968 | CG3358-RG | 78..947 | 8..877 | 4350 | 100 | Plus |
| CG3358-RF | 1216 | CG3358-RF | 78..947 | 8..877 | 4350 | 100 | Plus |
| CG3358-RE | 950 | CG3358-RE | 60..929 | 8..877 | 4350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6923879..6924486 | 162..769 | 3040 | 100 | Plus |
| 2R | 25286936 | 2R | 6923505..6923659 | 8..162 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 6924551..6924660 | 768..877 | 550 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:01:42 has no hits.
FMO01421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:36 Download gff for
FMO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RC | 66..946 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:48 Download gff for
FMO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RE | 53..933 | 1..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:22 Download gff for
FMO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3358-RE | 53..933 | 1..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:22 Download gff for
FMO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6923498..6923659 | 1..162 | 97 | -> | Plus |
| 2R | 6923880..6924486 | 163..769 | 100 | -> | Plus |
| 2R | 6924553..6924664 | 770..883 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:48 Download gff for
FMO01421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2811003..2811164 | 1..162 | 97 | -> | Plus |
| arm_2R | 2811385..2811991 | 163..769 | 100 | -> | Plus |
| arm_2R | 2812058..2812169 | 770..883 | 98 | | Plus |
