FMO01427.5prime Sequence
716 bp (716 high quality bases) assembled on 2008-03-18
> FMO01427.5prime
CAGTCGACATGTCATTGGAACAGCTGAAAAGCGATGTGGCCGAGCTGGCG
GCCTTCCTGCAGCAGGCGAAAGGTGCCCGCGTAAAAGACGTGCTGACCAC
CGCTAAAGCGGAGGCGGAACGGGAGATTGTCAATCTGGAGTTGAAGGCCA
AAATTGCGGCAGAGCGACAGGCCACCGGGTCGAGCGAAGCCAAGAGATAT
CTGCACGAGCTGACCGACTACGGCTGGGACCAGAGCGCCAAGTTCGTGAA
GCTCTTCATCACCTTGAACGGAGTGCAGGGCTGCACGGAGGAGAATGTGA
CAGTCACCTACACACCTAACTCGTTGCAGCTCCATGTGCGCGATCTTCAG
GGCAAGGACTTTGGGCTGACCGTAAACAATCTGCTGCACAGTATCGATGT
GGAGAAGAGCTACCGAAAGATCAAGACCGACATGGTGGCCATCTATCTGC
AGAAGGTTGAGGACAAGCACTGGGATGTGCTCACCGCTATCCAGAAGCGT
TTGAAGCAAAAGAAGGACAGCGAATTGTCCAAAGATGGCGACAATCCCGA
ATCGGCGCTTGTTAACATCATGAAGAAGATGTACAACGACGGTGACTCCA
AGACGAAGCAGATGATCGCCAAAGCTTGGACCGAGAGTCAGGATAAGGCG
AAGCTTGGCAAGGAGACGGGCGGCGGATTGGATTCTTTCGACGATCTTGC
AAGCTTTCTAGACCAT
FMO01427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3226-RA | 894 | CG3226-RA | 89..778 | 9..698 | 3450 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6653229..6653732 | 698..195 | 2520 | 100 | Minus |
| X | 23542271 | X | 6653908..6654084 | 196..20 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:34 has no hits.
FMO01427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:47 Download gff for
FMO01427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3226-RA | 27..716 | 9..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:29 Download gff for
FMO01427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3226-RA | 89..778 | 9..698 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:46 Download gff for
FMO01427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3226-RA | 89..778 | 9..698 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:46 Download gff for
FMO01427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6653229..6653730 | 197..698 | 100 | <- | Minus |
| X | 6653908..6654084 | 20..196 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:29 Download gff for
FMO01427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6547262..6547763 | 197..698 | 100 | <- | Minus |
| arm_X | 6547941..6548117 | 20..196 | 100 | | Minus |
