Clone FMO01431 Report

Search the DGRC for FMO01431

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:14
Well:31
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPaip2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01431.5prime Sequence

398 bp (398 high quality bases) assembled on 2008-03-18

> FMO01431.5prime
CAGTCGACATGTTGTTAAAAGTGCCATCTGTGGACTGGACGGATCAAATA
ATTTACGTAGTGGACGACGACAAGTCGCTGTCAGACATCGACGATGAGCC
AGATTTTTCCGAATACATGTGGATGGAGAACGAGGAGGAGTTCGACAAGA
ACGAACTGCAACGGCTGGAGGAGGAAGAGATTATGCAGGAGTGTTTTGAA
GCCATGATAGAAGACGAGCTGGAGGAGCAGATCAACGAATGGGAGAAGGC
CAAGACGGACGAGCAGAACACGGCACTTTCCGCACTACCCAAGAGCCAGT
GTGATGTTGAAAAGTCTGTTCTGAATCCGATGGCTGATGAGTTTGTTCCG
CGTTGTCATGTTATAGATTTCCCTGCCTCACCAAGCTTTCTAGACCAT

FMO01431.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
Paip2-RB 1045 CG12358-RB 334..705 9..380 1845 99.7 Plus
Paip2-RA 1970 CG12358-RA 348..719 9..380 1845 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12983740..12983884 9..153 710 99.3 Plus
3R 32079331 3R 12984111..12984237 254..380 635 100 Plus
3R 32079331 3R 12983947..12984048 153..254 510 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:38:36 has no hits.

FMO01431.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:51 Download gff for FMO01431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12358-RA 348..725 9..386 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:34 Download gff for FMO01431.5prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 9..386 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:11 Download gff for FMO01431.5prime
Subject Subject Range Query Range Percent Splice Strand
Paip2-RA 348..725 9..386 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:11 Download gff for FMO01431.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12983732..12983883 1..152 97 -> Plus
3R 12983947..12984047 153..253 100 -> Plus
3R 12984111..12984243 254..386 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:34 Download gff for FMO01431.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8809454..8809605 1..152 97 -> Plus
arm_3R 8809669..8809769 153..253 100 -> Plus
arm_3R 8809833..8809965 254..386 98   Plus