FMO01435.5prime Sequence
587 bp (587 high quality bases) assembled on 2008-03-18
> FMO01435.5prime
CAGTCGACATGAGTGCCACAGATGCATCTACAGCCGATAGTGGCGCTAAA
CGAAAATCTTCTGAAGATATCACACACAATTGCAACGCAAATTTTGGCGC
AGAAAACGGCCTAAGAAAGCGCGTAAAATCGGAGGAGCCTGTGGCGTCCA
TTAAAGATGAAACAAATCCTGAAGTTCCTATGAAAATAAAAGCTGAGCCA
GTGGAGAATGCAGATGAGCCCACAAGCACTACTCCTGCGATCAAGATTAA
AGCCGAACCAGCGGACAATGGAAACTCACCTGCAGCTGCGATGGTAAAAA
CCGAGCCCACTAATAGCAATGCACAGGACGCCGCCGACGAGTCTACCGTA
TCTTCAAGCAGTATTAGGACTTCTTGTCGCTTCGGCATACGATGCTACAG
GCGAAATCCAGCTCATCGTAGTGCAGAAGCTCATCCGGGGGATCAGGATT
ACCGGCGACCAAACTTTCCAGCGCCACCCCTCGGAACTCCAGCTTGTCCT
TTCGGTAACGCATGCTATCGCCGTAACCCAGTTCACTTCCAGGATTACTC
CCATCCTGCGGATTGTAAGGCAAGCTTTCTAGACCAT
FMO01435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:58:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6171-RA | 1001 | CG6171-RA | 90..650 | 9..569 | 2805 | 100 | Plus |
| CG6171-RB | 947 | CG6171-RB | 90..645 | 9..564 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15363376..15363768 | 401..9 | 1965 | 100 | Minus |
| 3R | 32079331 | 3R | 15363147..15363319 | 569..397 | 865 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:58:47 has no hits.
FMO01435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:39 Download gff for
FMO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 164..734 | 9..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:11 Download gff for
FMO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 90..660 | 9..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:39 Download gff for
FMO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6171-RA | 90..660 | 9..577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:39 Download gff for
FMO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15363137..15363315 | 401..577 | 97 | <- | Minus |
| 3R | 15363377..15363768 | 9..400 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:11 Download gff for
FMO01435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11188859..11189037 | 401..577 | 97 | <- | Minus |
| arm_3R | 11189099..11189490 | 9..400 | 100 | | Minus |
