FMO01440.5prime Sequence
614 bp (614 high quality bases) assembled on 2008-03-18
> FMO01440.5prime
CAGTCGACATGAACATCCGCTGCGCAAAACCGGAAGACCTAATGACCATG
CAGCACTGCAATCTGCTGTGTCTACCCGAAAACTACCAGATGAAGTACTA
CTTTTACCACGGACTAACCTGGCCTCAGCTTAGCTACGTGGCCGTTGACG
ACAAGGGCGCCATTGTGGGCTATGTCCTGGCCAAGATGGAGGAGCCGGAG
CCCAATGAGGAGAGCCGCCATGGGCACATCACCTCGCTAGCGGTCAAGCG
TTCCTATCGGCGATTGGGCCTGGCCCAGAAGCTCATGAATCAGGCCTCCC
AGGCCATGGTCGAGTGCTTCAATGCCCAGTACGTGTCCCTGCACGTGAGG
AAGAGCAATCGGGCTGCCCTGAACCTCTACACCAACGCCCTCAAGTTCAA
GATCATCGAGGTGGAGCCCAAGTACTATGCCGATGGCGAGGATGCATATG
CCATGCGACGCGACCTCAGCGAGTTTGCCGATGAGGATCAGGCCAAGGCT
GCGAAGCAGTCAGGCGAGGAGGAGGAGAAGGCGGTCCACAGATCCGGCGG
ACATGGCCACTCGCACAACCACAGCGGTCACGATGGCCATTGTTGCGCAA
GCTTTCTAGACCAT
FMO01440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vnc-RB | 1016 | CG11989-RB | 268..856 | 8..596 | 2945 | 100 | Plus |
| vnc-RC | 1137 | CG11989-RC | 389..977 | 8..596 | 2945 | 100 | Plus |
| vnc-RD | 1176 | CG11989-RD | 428..1016 | 8..596 | 2945 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9973275..9973863 | 8..596 | 2945 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 2766..2827 | 499..558 | 106 | 67.7 | Plus |
FMO01440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:05 Download gff for
FMO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11989-RD | 409..1017 | 1..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:39 Download gff for
FMO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RD | 419..1027 | 1..606 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:16 Download gff for
FMO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vnc-RD | 419..1027 | 1..606 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:16 Download gff for
FMO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9973266..9973874 | 1..606 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:39 Download gff for
FMO01440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9966366..9966974 | 1..606 | 98 | | Plus |
