FMO01443.5prime Sequence
1206 bp (735 high quality bases) assembled on 2008-03-18
> FMO01443.5prime
CAATCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCACCAGCGGATC
CTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGCGACGAGGT
CAACGCACAGCCCATCATCAAGTCCATGGACACCATTGGCGGCCTCCCCA
CCGAACTGGTCAACGAACAGAAGCTGAATAAGACTACCATAACCTTATCG
ACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACGGTGTCGAA
AGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGTGCGTGACA
TCACCACCGTGACGAAGGCATACAATTGCACCGACGCACCCAAATGGTTC
GCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAACCGCGGCAT
CCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGATCTTACGC
CGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGGAAATGCTC
CAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGCACCACCAG
ACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCTGACTGCCA
TTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTCTCAAGAAG
CACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTCTTCCACGA
AATCACATACATCACTACCTGCGGACAATCGTTGGACCAACTGAACTCGA
ACCGCTGTGTCTCGGAATTCACATGGAAAACTACAAAGCAATTGTCGAAA
TAAGACTGCCTATTACTCCTTCTACCTTCCATTCGCACTTGCTTTGCACT
TGGCTGGCTATAAAGACGCAGACGCCTTCCGTCAATCGAAGACCATTCTC
CTAGACTGGGCAACTTTTTCCAGGATCAGATGATTTCATCGACTGCTTCG
GTAATCCGGAGTGACTGCTAAAATAGAAACCGACATTCAGGACAACAGTG
CTCGTGCTGCCTGAGGTGGCTATCATTAGCAATGTCAGCAAAGCAATCAT
GGTCGATGCTATGGCAAAAAAAGCAACTAATGAAGAAGTGTAATGACTGT
AAGACCTGACTGCATCCCTATGCCATTTCCAGGAATCTCAAACTGAATAA
CGTCATACAGACAACTCACGCAGAGGCCCTCTACCGAAACCTTCTGTGCG
AAGAAT
FMO01443.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fpps-RA | 1465 | CG12389-RA | 87..1160 | 9..1068 | 4705 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11306159..11306521 | 857..497 | 1715 | 99.4 | Minus |
| 2R | 25286936 | 2R | 11306580..11306794 | 497..283 | 1030 | 98.6 | Minus |
| 2R | 25286936 | 2R | 11307265..11307442 | 186..9 | 845 | 98.3 | Minus |
| 2R | 25286936 | 2R | 11306865..11306959 | 285..191 | 475 | 100 | Minus |
| 2R | 25286936 | 2R | 11305956..11306099 | 997..857 | 465 | 93.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:40:05 has no hits.
FMO01443.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:07 Download gff for
FMO01443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12389-RA | 116..1211 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:40:58 Download gff for
FMO01443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fpps-RA | 79..1174 | 1..1080 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:24 Download gff for
FMO01443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fpps-RA | 79..1174 | 1..1080 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:24 Download gff for
FMO01443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11306580..11306791 | 286..497 | 98 | <- | Minus |
| 2R | 11306865..11306959 | 191..285 | 100 | <- | Minus |
| 2R | 11307261..11307449 | 1..190 | 95 | | Minus |
| 2R | 11306159..11306520 | 498..857 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:40:58 Download gff for
FMO01443.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7193664..7194025 | 498..857 | 99 | <- | Minus |
| arm_2R | 7194085..7194296 | 286..497 | 98 | <- | Minus |
| arm_2R | 7194370..7194464 | 191..285 | 100 | <- | Minus |
| arm_2R | 7194766..7194954 | 1..190 | 95 | | Minus |
