FMO01445.5prime Sequence
1206 bp (1027 high quality bases) assembled on 2008-03-18
> FMO01445.5prime
CAGTCGACATGGTGAGCCTGCTGCAAGAGATCGACACCGAGCACGAGGAC
ATGGTCCACCACGCAGCGCTGGACTTCTACGGCCTACTGTTGGCCACCTG
CTCCTCGGACGGCAGCGTCCGCATCTTTCACTCGCGCAAAAACAATAAGG
CGCTCGCCGAGCTCAAGGGACACCAGGGACCAGTGTGGCAGGTGGCCTGG
GCACATCCCAAGTTTGGCAACATACTGGCATCGTGCTCCTACGACCGCAA
GGTGATCGTCTGGAAGTCCACAACGCCCCGGGATTGGACTAAGCTCTACG
AATACAGCAACCACGACTCCTCGGTAAACTCGGTGGACTTCGCGCCATCC
GAGTACGGATTGGTGTTGGCCTGCGCCAGTTCGGATGGCTCGGTATCGGT
GCTCACCTGCAACACGGAGTACGGTGTGTGGGATGCCAAGAAGATACCGA
ATGCGCACACGATCGGAGTGAATGCCATCTCGTGGTGCCCCGCCCAGGCA
CCAGATCCAGCATTTGACCAGCGCGTAACTTCGCGTTCGGCGGCCGTAAA
GCGCCTAGTGAGCGGTGGTTGCGATAATTTAGTGAAGATTTGGCGGGAGG
ACAACGACCGCTGGGTGGAGGAGCACCGACTGGAGGCGCACTCGGATTGG
GTGCGCGACGTGGCCTGGCGCCGTCGATCGGATTGCCCCGCTCGCAGATT
GCCACGGCTTCGCAGGATCGCCATGTGATTGTGTGGAGCAGCAACGCAGA
TCTATCCGAGTGGACCTCGACTGTGCTGCACACATTCGACGATGCCGTGT
GGAGCATCTCGTGGTCAACCACCGGCAACATTCTTGCCGTCACCGGTGGG
GACAACAATGTCACATTGTGAAAGGAGAACACGGAGGGCCAATGATCCGC
ATCACTACGAGTCGGGTACGGCATCCAGTCGAGCAGCCCTCGCACCTTCC
GCATTCCCACTCCCAGCAGCAGCAGCGCTACACAGCACAACAACAGGCGC
CATCGCATCAGTCTTCCTCGATCGGAGCAAAGCTCGACTGTCCACTCGCC
AGCTCTCCAACGCAGCTTTCTAGAACATCGTTGGCCGCGCGGCCAGTAGT
GGGTCTAATCTAATCCTAATCTATCTATTCACACTAGCTAGGAATCTGGC
AGACTATGCTTGAATCCCACAATAAAGCGCGGGGCGACCAGACGGTCTCG
TCTGAC
FMO01445.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:28:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sec13-RB | 1809 | CG6773-RB | 389..1456 | 9..1061 | 4900 | 98.2 | Plus |
| Sec13-RA | 1343 | CG6773-RA | 104..1171 | 9..1061 | 4900 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23357398..23358119 | 296..1009 | 3195 | 98.8 | Plus |
| 3R | 32079331 | 3R | 23356666..23356952 | 9..295 | 1435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:28:34 has no hits.
FMO01445.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:09 Download gff for
FMO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6773-RA | 91..1171 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:20 Download gff for
FMO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec13-RA | 96..1176 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:31 Download gff for
FMO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sec13-RA | 96..1176 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:31 Download gff for
FMO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23356658..23356952 | 1..295 | 98 | -> | Plus |
| 3R | 23357398..23358183 | 296..1066 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:20 Download gff for
FMO01445.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19182380..19182674 | 1..295 | 98 | -> | Plus |
| arm_3R | 19183120..19183905 | 296..1066 | 97 | | Plus |
