FMO01446.5prime Sequence
1205 bp (1023 high quality bases) assembled on 2008-03-18
> FMO01446.5prime
CAGTCGACATGGCACTTTGGGTGGATAAATACCGTCCGCGGGAGCTGTCC
AAATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAACCTTTGCAA
GCAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGGTGCTGGCA
AGAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGATCCGGCGTT
GAGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCCAATCGGAA
GGTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGTGAATCCCT
CCGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCATCAAGCAG
GTGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAATTCAAGGT
GATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCAGCACGCCC
TGCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAATCATATCG
GTGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGTTGCCTGGG
CATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCATCTTGCAGA
ACACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGGCCAAACGG
GTTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTGATGCTGGA
GGCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGAGATTCCCGA
CCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGATTATCAGTG
AGCAAACGCCTGCCAAACTGGAGAAGATCCGCGAACGCCTGTACGAGCTA
CTCACGCAAGGCGTTCCACCTAATCTCATATTCCGCGGCCTGCTCGACAG
CTGGTTAACAATTGTGATATGTCCATCAGGCAAAGACGCTCGAGTTCGCC
ACCGAGTACGAGCACGATGCAGTCGGCGCCAAGCACATTTTTCATCTGAG
CGTCGTCGCTCAGTTATGAACATCTATAAAAGTTCTTTCTGGACTGACAT
GACGATGATTGCAAGCTTCCTAGAACATCGTGGCGCGCGGCCCAGTATGG
CCTAACCTATCTAATCAAACTAATCCACCTAGCCTAGATTCGGCTGGACT
AGCGTGGAATCTCACAATAAAGCCCGCGCGAACACGAGAGCGTCTGTACA
AAACT
FMO01446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-RB | 1604 | CG6258-RB | 471..1540 | 5..1060 | 4950 | 98.3 | Plus |
| RfC38-RA | 1276 | CG6258-RA | 143..1212 | 5..1060 | 4950 | 98.3 | Plus |
| Nup160-RA | 4747 | CG4738-RA | 4408..4747 | 1060..735 | 1315 | 95 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11129029..11130003 | 1031..67 | 4415 | 98.8 | Minus |
| 2L | 23513712 | 2L | 11130111..11130175 | 69..5 | 310 | 98.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:18 has no hits.
FMO01446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:48:55 Download gff for
FMO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6258-RA | 468..1533 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:51 Download gff for
FMO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 140..1205 | 1..1054 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:00 Download gff for
FMO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 140..1205 | 1..1054 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:00 Download gff for
FMO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11129029..11130001 | 69..1031 | 98 | <- | Minus |
| 2L | 11130112..11130176 | 1..68 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:51 Download gff for
FMO01446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11129029..11130001 | 69..1031 | 98 | <- | Minus |
| arm_2L | 11130112..11130176 | 1..68 | 94 | | Minus |
