FMO01450.5prime Sequence
990 bp (990 high quality bases) assembled on 2008-03-18
> FMO01450.5prime
CAGTCGACATGGCTGTACCGAACGTTAAATTCAACAACGGCAAGGAAGTC
CCAATCATTGGACTGGGAACCTGGGGCAGCCCCAAGGGTCAGGTCACCGA
GGCTGTCAAAGTTGCCATTGATGCCGGATACAGGCACATTGACTGTGCCT
ATGTATACCAAAACGAGGATGAGGTCGGAGATGGTGTTGAGGCCAAGATC
AAGGAGGGCGTTGTCAAGCGTGAGGATCTGTTCATCACCAGCAAACTGTG
GAACACTTTCCATCGCCCGGATCTTGTCAAGTCGGCATTGGAGAACACAT
TGAGCTCCCTGAAGCTGAAGTACCTCGATCTGTACCTTATCCACTGGCCC
ATGGGCTACAAGGAGGGATGCGATCTGTTCCCCACCGACAAGGATGGCAA
GACGCTGTACTCGCCGGTTGATTACGTCGACACGTGGAAGGCCATGGAGA
AGTTGGTGGAAGAGGGTCTGGTCAAGTCCATTGGTGTTTCCAACTTCAAC
AGAAGGCAGATCGAGCGCGTGCTTGAGGTGGCCACTATTCCACCAGTAAC
CAATCAGATTGAGTGCCATCCATATCTGACCCAGAAGAAGCTGATTGACT
TCTGCAAGTCAAAGGACATTACAATCACTGCCTACAGTCCCTTGGGATCT
CCCAACCGCCCATGGGCCAAGGCTGGTGATCCGGTCATCCTAGAGGAGGC
TAAGATCAAGGAAATTGCCGCTAAGAAGAAGAAGACCCCTGGACAGATCC
TTATTCGATACCAGGTTCAGCGTGCCAACATTGTTATCCCCAAATCTGTG
ACCAAGGACCGCATCGAGTCCAACTTCCAGGTCTTCGACTTCGAACTGAC
ACCTGAGGAAATCGAAATCATCGAAAGCTTCGAGTGCACGGCCGCCTTGT
TCCCTACTCAACCAATACGGTCACCCTCACCCCCTTTCGAGAGGACGATA
CGCAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCAGGT
FMO01450.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6084-RA | 1135 | CG6084-RA | 100..1043 | 9..948 | 4620 | 99.6 | Plus |
| CG6084-RD | 1316 | CG6084-RD | 100..1004 | 9..911 | 4475 | 99.8 | Plus |
| CG6084-RC | 1172 | CG6084-RC | 206..1080 | 78..948 | 4275 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11621483..11621967 | 704..220 | 2425 | 100 | Minus |
| 3L | 28110227 | 3L | 11621222..11621424 | 904..703 | 965 | 99.5 | Minus |
| 3L | 28110227 | 3L | 11622033..11622175 | 220..78 | 715 | 100 | Minus |
| 3L | 28110227 | 3L | 11623548..11623616 | 77..9 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:01:51 has no hits.
FMO01450.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:16 Download gff for
FMO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RA | 63..1020 | 1..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:51 Download gff for
FMO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RA | 93..1050 | 1..955 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:26 Download gff for
FMO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6084-RA | 93..1050 | 1..955 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:26 Download gff for
FMO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11621214..11621422 | 705..911 | 99 | <- | Minus |
| 3L | 11621483..11621966 | 221..704 | 100 | <- | Minus |
| 3L | 11622033..11622175 | 78..220 | 100 | <- | Minus |
| 3L | 11623548..11623622 | 1..77 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:51 Download gff for
FMO01450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11616648..11616722 | 1..77 | 94 | | Minus |
| arm_3L | 11614314..11614522 | 705..911 | 99 | <- | Minus |
| arm_3L | 11614583..11615066 | 221..704 | 100 | <- | Minus |
| arm_3L | 11615133..11615275 | 78..220 | 100 | <- | Minus |
